Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 381)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 49228)	% of Background Sequences with Motif
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-61	-1.406e+02	0.0000	264.0	69.29%	13902.0	28.24%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-49	-1.138e+02	0.0000	331.0	86.88%	25038.0	50.87%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-48	-1.124e+02	0.0000	240.0	62.99%	13154.6	26.72%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-42	-9.862e+01	0.0000	314.0	82.41%	23739.1	48.23%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-39	-9.112e+01	0.0000	307.0	80.58%	23407.0	47.55%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-10	-2.425e+01	0.0000	51.0	13.39%	2316.9	4.71%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-6	-1.399e+01	0.0000	58.0	15.22%	3833.1	7.79%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-5	-1.242e+01	0.0001	61.0	16.01%	4324.5	8.79%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-4	-9.626e+00	0.0019	99.0	25.98%	8852.1	17.98%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-4	-9.521e+00	0.0019	76.0	19.95%	6348.1	12.90%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-3	-9.202e+00	0.0024	20.0	5.25%	977.1	1.98%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-3	-8.386e+00	0.0050	133.0	34.91%	13109.8	26.63%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-3	-8.217e+00	0.0055	71.0	18.64%	6074.0	12.34%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-3	-7.444e+00	0.0110	48.0	12.60%	3793.6	7.71%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-3	-7.267e+00	0.0123	49.0	12.86%	3928.9	7.98%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-2	-6.555e+00	0.0235	48.0	12.60%	3958.1	8.04%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-2	-6.106e+00	0.0346	38.0	9.97%	3004.9	6.10%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-2	-6.067e+00	0.0346	38.0	9.97%	3011.2	6.12%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-2	-5.775e+00	0.0431	19.0	4.99%	1204.7	2.45%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-2	-5.477e+00	0.0552	48.0	12.60%	4183.2	8.50%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-2	-5.287e+00	0.0636	220.0	57.74%	25123.8	51.04%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-2	-5.186e+00	0.0671	151.0	39.63%	16394.3	33.31%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-2	-5.144e+00	0.0671	80.0	21.00%	7867.1	15.98%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-2	-5.123e+00	0.0671	58.0	15.22%	5368.7	10.91%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-2	-5.116e+00	0.0671	72.0	18.90%	6954.9	14.13%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-2	-4.810e+00	0.0827	27.0	7.09%	2110.2	4.29%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-1	-4.536e+00	0.1048	132.0	34.65%	14319.7	29.09%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-1	-4.318e+00	0.1256	120.0	31.50%	12941.2	26.29%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-1	-4.278e+00	0.1263	88.0	23.10%	9101.9	18.49%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-1	-4.131e+00	0.1414	52.0	13.65%	4968.3	10.09%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-1	-3.587e+00	0.2356	84.0	22.05%	8894.6	18.07%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-1	-3.436e+00	0.2655	94.0	24.67%	10163.7	20.65%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-1	-3.417e+00	0.2655	74.0	19.42%	7770.8	15.79%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-1	-3.040e+00	0.3715	42.0	11.02%	4163.4	8.46%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-1	-3.026e+00	0.3715	33.0	8.66%	3146.0	6.39%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-1	-3.006e+00	0.3715	35.0	9.19%	3376.5	6.86%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-1	-3.001e+00	0.3715	152.0	39.90%	17573.2	35.70%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-1	-2.896e+00	0.3838	30.0	7.87%	2845.5	5.78%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-1	-2.769e+00	0.4246	11.0	2.89%	834.4	1.70%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-1	-2.724e+00	0.4331	84.0	22.05%	9283.4	18.86%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-1	-2.697e+00	0.4342	172.0	45.14%	20297.9	41.24%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-1	-2.655e+00	0.4418	265.0	69.55%	32419.1	65.86%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-1	-2.590e+00	0.4607	329.0	86.35%	41111.8	83.52%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-1	-2.590e+00	0.4607	68.0	17.85%	7408.7	15.05%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-1	-2.575e+00	0.4607	52.0	13.65%	5500.5	11.17%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-1	-2.517e+00	0.4630	83.0	21.78%	9266.1	18.82%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-1	-2.486e+00	0.4675	26.0	6.82%	2511.8	5.10%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e-1	-2.449e+00	0.4750	111.0	29.13%	12761.8	25.93%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-1	-2.392e+00	0.4929	121.0	31.76%	14045.1	28.53%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-1	-2.355e+00	0.5013	90.0	23.62%	10214.7	20.75%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-1	-2.332e+00	0.5026	147.0	38.58%	17359.6	35.27%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-2.269e+00	0.5249	48.0	12.60%	5153.9	10.47%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-2.243e+00	0.5288	96.0	25.20%	11021.3	22.39%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-2.241e+00	0.5288	37.0	9.71%	3862.6	7.85%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-2.166e+00	0.5500	16.0	4.20%	1478.8	3.00%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-2.165e+00	0.5500	104.0	27.30%	12064.4	24.51%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-2.151e+00	0.5500	115.0	30.18%	13449.0	27.32%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-2.102e+00	0.5562	9.0	2.36%	737.8	1.50%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-2.100e+00	0.5562	74.0	19.42%	8389.2	17.04%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-2.081e+00	0.5562	46.0	12.07%	4997.8	10.15%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-2.080e+00	0.5562	14.0	3.67%	1279.0	2.60%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-2.030e+00	0.5591	20.0	5.25%	1963.4	3.99%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-2.028e+00	0.5591	167.0	43.83%	20123.3	40.88%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-1.954e+00	0.5847	38.0	9.97%	4096.5	8.32%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-1.922e+00	0.5944	16.0	4.20%	1540.7	3.13%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-1.913e+00	0.5944	73.0	19.16%	8374.9	17.01%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.878e+00	0.6023	7.0	1.84%	566.6	1.15%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.866e+00	0.6023	166.0	43.57%	20122.2	40.88%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.845e+00	0.6047	32.0	8.40%	3427.2	6.96%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.843e+00	0.6047	211.0	55.38%	25935.9	52.69%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.820e+00	0.6047	212.0	55.64%	26084.6	52.99%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-1.747e+00	0.6393	22.0	5.77%	2284.5	4.64%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.736e+00	0.6393	72.0	18.90%	8359.5	16.98%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-1.686e+00	0.6607	24.0	6.30%	2541.8	5.16%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.681e+00	0.6607	16.0	4.20%	1608.3	3.27%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.676e+00	0.6607	240.0	62.99%	29847.7	60.64%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-1.668e+00	0.6607	32.0	8.40%	3502.7	7.12%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-1.658e+00	0.6607	40.0	10.50%	4473.4	9.09%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.649e+00	0.6607	80.0	21.00%	9412.1	19.12%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-1.631e+00	0.6607	86.0	22.57%	10175.1	20.67%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.613e+00	0.6607	127.0	33.33%	15359.9	31.20%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-1.596e+00	0.6607	181.0	47.51%	22276.2	45.25%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-1.591e+00	0.6607	133.0	34.91%	16140.3	32.79%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-1.580e+00	0.6607	38.0	9.97%	4269.9	8.67%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.502e+00	0.6919	139.0	36.48%	16982.9	34.50%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-1.501e+00	0.6919	85.0	22.31%	10145.8	20.61%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.472e+00	0.6963	39.0	10.24%	4447.9	9.04%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.465e+00	0.6963	27.0	7.09%	2990.8	6.08%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.446e+00	0.6988	44.0	11.55%	5076.6	10.31%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-1.439e+00	0.6988	29.0	7.61%	3244.3	6.59%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-1.434e+00	0.6988	56.0	14.70%	6568.3	13.34%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.430e+00	0.6988	82.0	21.52%	9822.3	19.95%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.426e+00	0.6988	29.0	7.61%	3250.6	6.60%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.413e+00	0.6988	51.0	13.39%	5961.4	12.11%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.320e+00	0.7425	55.0	14.44%	6520.5	13.25%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.282e+00	0.7632	8.0	2.10%	796.9	1.62%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.257e+00	0.7747	153.0	40.16%	19007.8	38.61%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.253e+00	0.7747	180.0	47.24%	22481.0	45.67%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-1.249e+00	0.7747	92.0	24.15%	11234.3	22.82%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.248e+00	0.7747	60.0	15.75%	7197.6	14.62%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.237e+00	0.7747	58.0	15.22%	6954.4	14.13%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.227e+00	0.7747	68.0	17.85%	8220.0	16.70%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-1.222e+00	0.7747	163.0	42.78%	20327.3	41.30%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.203e+00	0.7747	93.0	24.41%	11402.8	23.16%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-1.193e+00	0.7747	91.0	23.88%	11157.0	22.67%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.193e+00	0.7747	118.0	30.97%	14594.8	29.65%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-1.185e+00	0.7747	16.0	4.20%	1779.2	3.61%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.077e+00	0.8329	23.0	6.04%	2688.5	5.46%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-1.073e+00	0.8329	102.0	26.77%	12673.9	25.75%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-1.066e+00	0.8329	36.0	9.45%	4316.1	8.77%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e0	-1.042e+00	0.8389	88.0	23.10%	10919.9	22.18%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.036e+00	0.8389	140.0	36.75%	17579.5	35.71%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-1.009e+00	0.8514	96.0	25.20%	11973.5	24.32%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.004e+00	0.8514	157.0	41.21%	19801.7	40.23%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-1.001e+00	0.8514	142.0	37.27%	17876.3	36.32%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-9.758e-01	0.8577	17.0	4.46%	1994.7	4.05%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-9.646e-01	0.8600	16.0	4.20%	1875.5	3.81%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-9.186e-01	0.8929	6.0	1.57%	657.5	1.34%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-8.930e-01	0.9083	55.0	14.44%	6856.5	13.93%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-8.835e-01	0.9093	157.0	41.21%	19952.7	40.53%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-8.746e-01	0.9099	77.0	20.21%	9686.0	19.68%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-8.692e-01	0.9099	185.0	48.56%	23581.9	47.91%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-8.485e-01	0.9188	12.0	3.15%	1429.8	2.90%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-8.317e-01	0.9268	28.0	7.35%	3466.9	7.04%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-8.314e-01	0.9268	54.0	14.17%	6786.9	13.79%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-8.012e-01	0.9403	39.0	10.24%	4894.5	9.94%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-7.905e-01	0.9429	96.0	25.20%	12222.3	24.83%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-7.674e-01	0.9574	34.0	8.92%	4282.0	8.70%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-7.648e-01	0.9574	77.0	20.21%	9809.8	19.93%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-7.566e-01	0.9574	27.0	7.09%	3393.5	6.89%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-6.856e-01	1.0000	158.0	41.47%	20364.2	41.37%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-6.778e-01	1.0000	13.0	3.41%	1644.3	3.34%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-6.371e-01	1.0000	133.0	34.91%	17212.1	34.97%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-6.343e-01	1.0000	74.0	19.42%	9585.2	19.47%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-6.280e-01	1.0000	108.0	28.35%	13994.9	28.43%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-6.267e-01	1.0000	5.0	1.31%	627.7	1.28%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-6.201e-01	1.0000	113.0	29.66%	14653.4	29.77%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-6.104e-01	1.0000	19.0	4.99%	2469.4	5.02%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-5.886e-01	1.0000	65.0	17.06%	8479.0	17.23%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-5.681e-01	1.0000	6.0	1.57%	784.5	1.59%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-5.662e-01	1.0000	87.0	22.83%	11368.3	23.09%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-5.594e-01	1.0000	123.0	32.28%	16047.6	32.60%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-5.588e-01	1.0000	135.0	35.43%	17603.0	35.76%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-5.526e-01	1.0000	4.0	1.05%	522.1	1.06%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-5.441e-01	1.0000	21.0	5.51%	2785.8	5.66%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-5.195e-01	1.0000	149.0	39.11%	19486.6	39.59%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-4.994e-01	1.0000	17.0	4.46%	2294.0	4.66%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-4.874e-01	1.0000	163.0	42.78%	21360.5	43.39%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-4.831e-01	1.0000	11.0	2.89%	1505.0	3.06%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-4.773e-01	1.0000	3.0	0.79%	413.3	0.84%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-4.637e-01	1.0000	57.0	14.96%	7613.7	15.47%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-4.430e-01	1.0000	27.0	7.09%	3682.0	7.48%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-4.239e-01	1.0000	15.0	3.94%	2092.6	4.25%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-4.111e-01	1.0000	23.0	6.04%	3184.0	6.47%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-4.044e-01	1.0000	159.0	41.73%	21020.0	42.70%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-3.872e-01	1.0000	322.0	84.51%	41941.9	85.21%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-3.855e-01	1.0000	10.0	2.62%	1442.4	2.93%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-3.807e-01	1.0000	83.0	21.78%	11172.7	22.70%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-3.661e-01	1.0000	14.0	3.67%	2011.5	4.09%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-3.383e-01	1.0000	1.0	0.26%	161.7	0.33%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-3.197e-01	1.0000	46.0	12.07%	6399.4	13.00%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-3.154e-01	1.0000	111.0	29.13%	14991.2	30.45%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-3.152e-01	1.0000	25.0	6.56%	3577.6	7.27%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-3.069e-01	1.0000	14.0	3.67%	2075.0	4.22%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-3.027e-01	1.0000	19.0	4.99%	2773.2	5.63%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-3.002e-01	1.0000	17.0	4.46%	2500.5	5.08%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-2.978e-01	1.0000	38.0	9.97%	5366.0	10.90%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-2.861e-01	1.0000	14.0	3.67%	2100.2	4.27%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-2.833e-01	1.0000	19.0	4.99%	2800.7	5.69%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-2.814e-01	1.0000	9.0	2.36%	1397.8	2.84%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-2.769e-01	1.0000	7.0	1.84%	1112.2	2.26%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-2.639e-01	1.0000	58.0	15.22%	8121.6	16.50%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-2.624e-01	1.0000	5.0	1.31%	829.9	1.69%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-2.586e-01	1.0000	101.0	26.51%	13834.8	28.11%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-2.465e-01	1.0000	192.0	50.39%	25720.5	52.25%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-2.424e-01	1.0000	58.0	15.22%	8174.0	16.61%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-2.373e-01	1.0000	28.0	7.35%	4119.1	8.37%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-2.345e-01	1.0000	31.0	8.14%	4537.5	9.22%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-2.297e-01	1.0000	231.0	60.63%	30783.7	62.54%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-2.296e-01	1.0000	17.0	4.46%	2602.8	5.29%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-2.287e-01	1.0000	35.0	9.19%	5097.8	10.36%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-2.180e-01	1.0000	12.0	3.15%	1907.6	3.88%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-2.099e-01	1.0000	225.0	59.06%	30086.5	61.12%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-1.983e-01	1.0000	4.0	1.05%	734.2	1.49%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-1.964e-01	1.0000	4.0	1.05%	736.6	1.50%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-1.900e-01	1.0000	81.0	21.26%	11404.1	23.17%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-1.850e-01	1.0000	100.0	26.25%	13945.4	28.33%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.849e-01	1.0000	217.0	56.96%	29159.4	59.24%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-1.847e-01	1.0000	5.0	1.31%	907.3	1.84%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-1.749e-01	1.0000	81.0	21.26%	11458.1	23.28%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.745e-01	1.0000	55.0	14.44%	7964.4	16.18%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.732e-01	1.0000	76.0	19.95%	10796.4	21.93%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.686e-01	1.0000	41.0	10.76%	6073.5	12.34%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.616e-01	1.0000	3.0	0.79%	609.5	1.24%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.615e-01	1.0000	7.0	1.84%	1249.2	2.54%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.569e-01	1.0000	90.0	23.62%	12729.8	25.86%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.467e-01	1.0000	9.0	2.36%	1580.3	3.21%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.405e-01	1.0000	299.0	78.48%	39686.7	80.62%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-1.396e-01	1.0000	3.0	0.79%	635.2	1.29%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.288e-01	1.0000	38.0	9.97%	5789.9	11.76%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.193e-01	1.0000	139.0	36.48%	19387.5	39.39%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.145e-01	1.0000	10.0	2.62%	1800.3	3.66%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.127e-01	1.0000	24.0	6.30%	3870.1	7.86%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.112e-01	1.0000	1.0	0.26%	290.9	0.59%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.088e-01	1.0000	252.0	66.14%	33973.0	69.02%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.076e-01	1.0000	51.0	13.39%	7677.1	15.60%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.053e-01	1.0000	133.0	34.91%	18684.1	37.96%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-9.652e-02	1.0000	98.0	25.72%	14104.2	28.65%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-9.426e-02	1.0000	75.0	19.69%	11025.0	22.40%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-9.191e-02	1.0000	100.0	26.25%	14401.7	29.26%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-8.920e-02	1.0000	54.0	14.17%	8185.2	16.63%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-8.685e-02	1.0000	43.0	11.29%	6670.3	13.55%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-7.494e-02	1.0000	322.0	84.51%	42794.8	86.94%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-7.128e-02	1.0000	8.0	2.10%	1607.5	3.27%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-7.128e-02	1.0000	8.0	2.10%	1607.5	3.27%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-6.879e-02	1.0000	1.0	0.26%	349.3	0.71%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-6.721e-02	1.0000	70.0	18.37%	10528.6	21.39%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-6.714e-02	1.0000	39.0	10.24%	6221.1	12.64%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-6.523e-02	1.0000	62.0	16.27%	9445.6	19.19%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-6.255e-02	1.0000	38.0	9.97%	6110.0	12.41%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-5.232e-02	1.0000	52.0	13.65%	8162.2	16.58%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-4.979e-02	1.0000	195.0	51.18%	27212.9	55.28%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-4.428e-02	1.0000	62.0	16.27%	9633.9	19.57%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e0	-4.288e-02	1.0000	26.0	6.82%	4515.4	9.17%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-3.977e-02	1.0000	5.0	1.31%	1225.3	2.49%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-3.605e-02	1.0000	250.0	65.62%	34345.8	69.77%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-3.359e-02	1.0000	103.0	27.03%	15370.5	31.23%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-3.243e-02	1.0000	6.0	1.57%	1444.4	2.93%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-3.206e-02	1.0000	120.0	31.50%	17671.4	35.90%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-3.075e-02	1.0000	56.0	14.70%	8960.8	18.20%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-2.162e-02	1.0000	3.0	0.79%	953.1	1.94%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.956e-02	1.0000	4.0	1.05%	1170.4	2.38%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-1.286e-02	1.0000	12.0	3.15%	2680.7	5.45%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.281e-02	1.0000	3.0	0.79%	1038.2	2.11%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.273e-02	1.0000	3.0	0.79%	1039.4	2.11%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.269e-02	1.0000	96.0	25.20%	14894.3	30.26%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.234e-02	1.0000	3.0	0.79%	1044.9	2.12%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.146e-02	1.0000	26.0	6.82%	4943.0	10.04%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-9.454e-03	1.0000	33.0	8.66%	6068.1	12.33%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-9.198e-03	1.0000	36.0	9.45%	6527.3	13.26%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-9.179e-03	1.0000	41.0	10.76%	7270.5	14.77%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-7.024e-03	1.0000	22.0	5.77%	4461.0	9.06%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-6.941e-03	1.0000	2.0	0.52%	905.4	1.84%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-6.792e-03	1.0000	61.0	16.01%	10279.5	20.88%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-6.173e-03	1.0000	5.0	1.31%	1572.5	3.19%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-5.935e-03	1.0000	67.0	17.59%	11184.2	22.72%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-5.781e-03	1.0000	16.0	4.20%	3541.8	7.20%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-5.063e-03	1.0000	9.0	2.36%	2365.8	4.81%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-4.430e-03	1.0000	43.0	11.29%	7811.7	15.87%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-3.679e-03	1.0000	6.0	1.57%	1863.3	3.79%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-3.527e-03	1.0000	30.0	7.87%	5910.8	12.01%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-3.496e-03	1.0000	68.0	17.85%	11524.8	23.41%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-2.142e-03	1.0000	7.0	1.84%	2158.9	4.39%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-1.887e-03	1.0000	200.0	52.49%	29383.2	59.69%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-7.750e-04	1.0000	235.0	61.68%	34049.7	69.17%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-6.600e-04	1.0000	168.0	44.09%	25687.7	52.18%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.000e-06	1.0000	81.0	21.26%	15895.7	32.29%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	0.000e+00	1.0000	0.0	0.00%	178.1	0.36%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	164.4	0.33%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	19.7	0.04%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	0.0	0.00%	442.2	0.90%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	49.6	0.10%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	146.9	0.30%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	0.000e+00	1.0000	0.0	0.00%	67.6	0.14%