Information for 1-CCATMTGYTN (Motif 1)


Reverse Opposite:

p-value:1e-279
log p-value:-6.444e+02
Information Content per bp:1.669
Number of Target Sequences with motif2004.0
Percentage of Target Sequences with motif38.69%
Number of Background Sequences with motif7756.2
Percentage of Background Sequences with motif17.59%
Average Position of motif in Targets404.3 +/- 236.6bp
Average Position of motif in Background372.4 +/- 231.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:1
Score:0.94
Offset:-1
Orientation:forward strand
Alignment:-CCATMTGYTN
RCCATMTGTT-

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:2
Score:0.90
Offset:-1
Orientation:forward strand
Alignment:-CCATMTGYTN
GCCATCTGTT-

MA0091.1_TAL1::TCF3/Jaspar

Match Rank:3
Score:0.87
Offset:-3
Orientation:forward strand
Alignment:---CCATMTGYTN
CGACCATCTGTT-

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:4
Score:0.87
Offset:-1
Orientation:reverse strand
Alignment:-CCATMTGYTN-
GCCAGCTGBTNB

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:5
Score:0.84
Offset:-5
Orientation:reverse strand
Alignment:-----CCATMTGYTN--
CCNNACCATCTGGCCTN

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:6
Score:0.81
Offset:-1
Orientation:reverse strand
Alignment:-CCATMTGYTN-
NVCAGCTGBBNN

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.80
Offset:1
Orientation:reverse strand
Alignment:CCATMTGYTN
-CAGCTGNT-

MA0058.2_MAX/Jaspar

Match Rank:8
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:CCATMTGYTN
CCATGTGCTT

MA0461.1_Atoh1/Jaspar

Match Rank:9
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-CCATMTGYTN
GCCATCTG---

MA0147.2_Myc/Jaspar

Match Rank:10
Score:0.77
Offset:0
Orientation:forward strand
Alignment:CCATMTGYTN
CCATGTGCTT