Information for 9-AACAGAATGTGY (Motif 10)


Reverse Opposite:

p-value:1e-58
log p-value:-1.337e+02
Information Content per bp:1.480
Number of Target Sequences with motif2215.0
Percentage of Target Sequences with motif42.77%
Number of Background Sequences with motif14130.1
Percentage of Background Sequences with motif32.05%
Average Position of motif in Targets399.4 +/- 265.5bp
Average Position of motif in Background376.9 +/- 231.8bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.27
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-AACAGAATGTGY--
GRACAGWMTGTYCTB

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:2
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-AACAGAATGTGY--
GVACAGNMTGTYCTB

MA0113.2_NR3C1/Jaspar

Match Rank:3
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--AACAGAATGTGY-
AGAACAGAATGTTCT

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--AACAGAATGTGY--
AGNACANNNTGTNCTN

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---AACAGAATGTGY-
NAGAACAGNCTGTNCT

MA0007.2_AR/Jaspar

Match Rank:6
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---AACAGAATGTGY
AAGAACAGAATGTTC

ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer

Match Rank:7
Score:0.63
Offset:1
Orientation:forward strand
Alignment:AACAGAATGTGY-
-ACAGGATGTGGT

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:8
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AACAGAATGTGY
AACAGGAAGT--

MA0058.2_MAX/Jaspar

Match Rank:9
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:AACAGAATGTGY--
----CCATGTGCTT

ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AACAGAATGTGY
-ACAGGAAGTG-