Information for 11-TCGGAACA (Motif 11)


Reverse Opposite:

p-value:1e-52
log p-value:-1.218e+02
Information Content per bp:1.617
Number of Target Sequences with motif3106.0
Percentage of Target Sequences with motif59.97%
Number of Background Sequences with motif21741.2
Percentage of Background Sequences with motif49.32%
Average Position of motif in Targets412.4 +/- 278.2bp
Average Position of motif in Background374.4 +/- 231.1bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.48
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-TCGGAACA-
CCAGGAACAG

MA0152.1_NFATC2/Jaspar

Match Rank:2
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:TCGGAACA
-TGGAAAA

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:3
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TCGGAACA
CSTGGGAAAD

PB0173.1_Sox21_2/Jaspar

Match Rank:4
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TCGGAACA-------
NNNNNGAACAATTGANN

PB0072.1_Sox5_1/Jaspar

Match Rank:5
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-TCGGAACA-------
TTTAGAACAATAAAAT

PB0062.1_Sox12_1/Jaspar

Match Rank:6
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TCGGAACA----
NTTNAGAACAATTA

MA0007.2_AR/Jaspar

Match Rank:7
Score:0.66
Offset:1
Orientation:forward strand
Alignment:TCGGAACA--------
-AAGAACAGAATGTTC

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:8
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:TCGGAACA----
--GGAACAAAGR

PB0063.1_Sox13_1/Jaspar

Match Rank:9
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TCGGAACA-------
TTAAGAACAATAAATT

PB0183.1_Sry_2/Jaspar

Match Rank:10
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TCGGAACA-------
TCACGGAACAATAGGTG