Information for 12-CTTCTGTGCAAA (Motif 12)


Reverse Opposite:

p-value:1e-51
log p-value:-1.176e+02
Information Content per bp:1.480
Number of Target Sequences with motif2217.0
Percentage of Target Sequences with motif42.81%
Number of Background Sequences with motif14434.2
Percentage of Background Sequences with motif32.74%
Average Position of motif in Targets406.5 +/- 273.0bp
Average Position of motif in Background373.5 +/- 231.5bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.68
Offset:2
Orientation:forward strand
Alignment:CTTCTGTGCAAA
--GCTGTG----

PB0208.1_Zscan4_2/Jaspar

Match Rank:2
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---CTTCTGTGCAAA-
NNNNTTGTGTGCTTNN

PB0207.1_Zic3_2/Jaspar

Match Rank:3
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----CTTCTGTGCAAA
NNTCCTGCTGTGNNN-

PB0104.1_Zscan4_1/Jaspar

Match Rank:4
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CTTCTGTGCAAA----
NTNTATGTGCACATNNN

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:5
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CTTCTGTGCAAA-
CCATTGTATGCAAAT

PB0026.1_Gm397_1/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CTTCTGTGCAAA----
NNGTATGTGCACATNNN

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:CTTCTGTGCAAA-
---CTGTTCCTGG

PB0205.1_Zic1_2/Jaspar

Match Rank:8
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----CTTCTGTGCAAA
TNTCCTGCTGTGNNG-

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----CTTCTGTGCAAA
CCCCCTGCTGTG----

MA0520.1_Stat6/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CTTCTGTGCAAA--
ANTTCTCAGGAANNN