Information for 25-TGACTGTACATG (Motif 26)


Reverse Opposite:

p-value:1e-2
log p-value:-6.573e+00
Information Content per bp:1.947
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.08%
Number of Background Sequences with motif4.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets198.8 +/- 120.4bp
Average Position of motif in Background323.4 +/- 213.4bp
Strand Bias (log2 ratio + to - strand density)3.8
Multiplicity (# of sites on avg that occur together)3.75
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0106.2_TP53/Jaspar

Match Rank:1
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TGACTGTACATG-
CATGTCTGGGCATGT

PH0085.1_Irx4/Jaspar

Match Rank:2
Score:0.60
Offset:2
Orientation:forward strand
Alignment:TGACTGTACATG-------
--AATATACATGTAAAACA

PH0084.1_Irx3_2/Jaspar

Match Rank:3
Score:0.60
Offset:2
Orientation:forward strand
Alignment:TGACTGTACATG-------
--AATATACATGTAATATA

MA0525.1_TP63/Jaspar

Match Rank:4
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----TGACTGTACATG---
NGGCATGTCTGGGCATGTNN

PH0083.1_Irx3_1/Jaspar

Match Rank:5
Score:0.59
Offset:2
Orientation:forward strand
Alignment:TGACTGTACATG-------
--AAAATACATGTAATACT

PH0082.1_Irx2/Jaspar

Match Rank:6
Score:0.59
Offset:2
Orientation:forward strand
Alignment:TGACTGTACATG-------
--TAAATACATGTAAAATT

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:TGACTGTACATG-
---CTGTTCCTGG

PH0087.1_Irx6/Jaspar

Match Rank:8
Score:0.58
Offset:2
Orientation:forward strand
Alignment:TGACTGTACATG-------
--AAAATACATGTAAAAAT

PH0086.1_Irx5/Jaspar

Match Rank:9
Score:0.58
Offset:2
Orientation:forward strand
Alignment:TGACTGTACATG-------
--AATATACATGTAAAATT

p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer

Match Rank:10
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----TGACTGTACATG----
AACATGCCCAGACATGCCCN