Information for 7-GCAGRMTGCT (Motif 7)


Reverse Opposite:

p-value:1e-76
log p-value:-1.763e+02
Information Content per bp:1.653
Number of Target Sequences with motif2634.0
Percentage of Target Sequences with motif50.86%
Number of Background Sequences with motif16806.4
Percentage of Background Sequences with motif38.12%
Average Position of motif in Targets411.7 +/- 274.8bp
Average Position of motif in Background374.8 +/- 236.5bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.43
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0461.1_Atoh1/Jaspar

Match Rank:1
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GCAGRMTGCT
-CAGATGGC-

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GCAGRMTGCT
CACAGN-----

PB0207.1_Zic3_2/Jaspar

Match Rank:3
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GCAGRMTGCT-
GAGCACAGCAGGACA

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GCAGRMTGCT
AACAGATGGC-

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:5
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GCAGRMTGCT
ANCAGGATGT-

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GCAGRMTGCT
CCAGACRSVB

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:7
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----GCAGRMTGCT
ATTTCCCAGVAKSCY

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GCAGRMTGCT
AACAKATGGY-

PB0206.1_Zic2_2/Jaspar

Match Rank:9
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GCAGRMTGCT-
CCACACAGCAGGAGA

PB0205.1_Zic1_2/Jaspar

Match Rank:10
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GCAGRMTGCT-
CCACACAGCAGGAGA