Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 5180)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 44089)	% of Background Sequences with Motif
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-197	-4.552e+02	0.0000	1266.0	24.44%	4386.9	9.95%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-197	-4.541e+02	0.0000	1771.0	34.20%	7470.0	16.94%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-193	-4.448e+02	0.0000	1968.0	38.00%	8846.4	20.07%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-180	-4.157e+02	0.0000	1011.0	19.52%	3187.6	7.23%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-176	-4.062e+02	0.0000	1929.0	37.25%	8881.8	20.15%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-166	-3.830e+02	0.0000	2053.0	39.64%	9938.1	22.54%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-153	-3.531e+02	0.0000	2771.0	53.50%	15643.6	35.48%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-125	-2.879e+02	0.0000	1341.0	25.89%	5918.7	13.43%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-120	-2.773e+02	0.0000	3868.0	74.69%	26092.0	59.19%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-119	-2.752e+02	0.0000	1709.0	33.00%	8506.1	19.29%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-113	-2.608e+02	0.0000	1230.0	23.75%	5421.2	12.30%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-106	-2.463e+02	0.0000	442.0	8.53%	1093.6	2.48%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-105	-2.439e+02	0.0000	2246.0	43.37%	12791.4	29.02%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-104	-2.411e+02	0.0000	480.0	9.27%	1284.8	2.91%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-84	-1.955e+02	0.0000	697.0	13.46%	2649.0	6.01%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-83	-1.916e+02	0.0000	497.0	9.60%	1580.6	3.59%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-71	-1.641e+02	0.0000	710.0	13.71%	2944.9	6.68%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-70	-1.613e+02	0.0000	2994.0	57.81%	20055.8	45.49%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-57	-1.327e+02	0.0000	454.0	8.77%	1674.5	3.80%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-41	-9.622e+01	0.0000	3032.0	58.54%	21643.3	49.09%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-33	-7.774e+01	0.0000	4907.0	94.75%	39715.8	90.09%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-24	-5.564e+01	0.0000	203.0	3.92%	771.8	1.75%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-21	-4.871e+01	0.0000	3964.0	76.54%	31133.4	70.62%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-18	-4.216e+01	0.0000	1819.0	35.12%	12971.5	29.42%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-18	-4.196e+01	0.0000	550.0	10.62%	3190.4	7.24%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-18	-4.185e+01	0.0000	1973.0	38.10%	14234.6	32.29%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-17	-4.080e+01	0.0000	965.0	18.63%	6279.8	14.24%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-17	-4.020e+01	0.0000	1541.0	29.75%	10794.5	24.49%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-16	-3.881e+01	0.0000	1403.0	27.09%	9737.7	22.09%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-15	-3.663e+01	0.0000	179.0	3.46%	775.5	1.76%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-15	-3.571e+01	0.0000	959.0	18.52%	6357.6	14.42%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-14	-3.298e+01	0.0000	3350.0	64.68%	26200.3	59.43%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-14	-3.275e+01	0.0000	1134.0	21.90%	7794.7	17.68%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-13	-3.204e+01	0.0000	915.0	17.67%	6114.3	13.87%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e-13	-3.143e+01	0.0000	1600.0	30.89%	11547.4	26.19%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-13	-3.133e+01	0.0000	583.0	11.26%	3627.1	8.23%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-13	-3.118e+01	0.0000	1399.0	27.01%	9940.3	22.55%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-12	-2.951e+01	0.0000	147.0	2.84%	644.5	1.46%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-12	-2.879e+01	0.0000	1136.0	21.93%	7929.7	17.99%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-11	-2.752e+01	0.0000	1789.0	34.54%	13228.3	30.01%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-11	-2.580e+01	0.0000	768.0	14.83%	5153.3	11.69%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-10	-2.448e+01	0.0000	908.0	17.53%	6276.0	14.24%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-10	-2.417e+01	0.0000	3144.0	60.71%	24781.3	56.21%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-10	-2.335e+01	0.0000	1918.0	37.03%	14460.5	32.80%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-9	-2.183e+01	0.0000	392.0	7.57%	2425.8	5.50%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-9	-2.171e+01	0.0000	592.0	11.43%	3920.6	8.89%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-9	-2.131e+01	0.0000	2645.0	51.07%	20646.2	46.83%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-9	-2.102e+01	0.0000	726.0	14.02%	4967.4	11.27%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-8	-1.940e+01	0.0000	2270.0	43.83%	17577.8	39.87%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-7	-1.791e+01	0.0000	255.0	4.92%	1513.1	3.43%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-7	-1.688e+01	0.0000	4641.0	89.61%	38438.3	87.19%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-7	-1.633e+01	0.0000	2402.0	46.38%	18850.5	42.76%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-7	-1.621e+01	0.0000	706.0	13.63%	4967.6	11.27%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-6	-1.594e+01	0.0000	1067.0	20.60%	7845.9	17.80%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-6	-1.593e+01	0.0000	632.0	12.20%	4400.0	9.98%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-6	-1.568e+01	0.0000	2967.0	57.29%	23692.0	53.74%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-6	-1.554e+01	0.0000	1387.0	26.78%	10458.3	23.72%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-6	-1.530e+01	0.0000	1600.0	30.89%	12217.2	27.71%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-6	-1.504e+01	0.0000	389.0	7.51%	2562.9	5.81%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-6	-1.428e+01	0.0000	523.0	10.10%	3608.1	8.18%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-6	-1.418e+01	0.0000	2747.0	53.04%	21901.8	49.68%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-6	-1.406e+01	0.0000	186.0	3.59%	1093.2	2.48%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e-5	-1.253e+01	0.0000	569.0	10.99%	4026.9	9.13%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-5	-1.220e+01	0.0000	570.0	11.01%	4046.5	9.18%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-5	-1.169e+01	0.0000	1507.0	29.10%	11650.9	26.43%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-4	-1.141e+01	0.0000	1110.0	21.43%	8409.0	19.07%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-4	-1.066e+01	0.0001	4112.0	79.40%	33962.5	77.04%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-4	-1.061e+01	0.0001	1178.0	22.75%	9008.1	20.43%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-4	-1.038e+01	0.0001	958.0	18.50%	7228.1	16.40%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-4	-9.444e+00	0.0003	352.0	6.80%	2446.3	5.55%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-4	-9.237e+00	0.0004	1090.0	21.05%	8368.5	18.98%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-3	-8.903e+00	0.0005	447.0	8.63%	3207.9	7.28%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-3	-8.873e+00	0.0005	355.0	6.85%	2489.2	5.65%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-3	-8.841e+00	0.0005	2714.0	52.40%	21988.1	49.88%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-3	-8.782e+00	0.0005	2261.0	43.66%	18151.1	41.17%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-3	-8.531e+00	0.0007	555.0	10.72%	4079.0	9.25%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e-3	-8.260e+00	0.0009	1188.0	22.94%	9234.5	20.95%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-3	-8.014e+00	0.0011	574.0	11.08%	4254.1	9.65%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-3	-7.560e+00	0.0017	468.0	9.04%	3430.9	7.78%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-3	-6.965e+00	0.0031	953.0	18.40%	7389.3	16.76%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-2	-6.329e+00	0.0058	185.0	3.57%	1263.4	2.87%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-2	-6.325e+00	0.0058	1364.0	26.34%	10833.8	24.57%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-2	-5.991e+00	0.0080	397.0	7.67%	2938.9	6.67%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-2	-5.983e+00	0.0080	251.0	4.85%	1785.9	4.05%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-2	-5.827e+00	0.0092	2519.0	48.64%	20596.4	46.72%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-2	-5.648e+00	0.0108	270.0	5.21%	1947.7	4.42%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-2	-5.434e+00	0.0132	2425.0	46.82%	19838.3	45.00%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-2	-5.341e+00	0.0144	2319.0	44.78%	18949.4	42.98%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-2	-5.109e+00	0.0179	347.0	6.70%	2582.5	5.86%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-2	-4.794e+00	0.0243	1894.0	36.57%	15416.4	34.97%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-2	-4.650e+00	0.0277	246.0	4.75%	1800.8	4.08%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-1	-4.562e+00	0.0300	833.0	16.08%	6578.1	14.92%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-1	-4.550e+00	0.0300	673.0	12.99%	5262.6	11.94%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-1	-4.517e+00	0.0307	636.0	12.28%	4961.4	11.25%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-1	-4.465e+00	0.0320	250.0	4.83%	1840.5	4.17%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-1	-4.173e+00	0.0424	758.0	14.64%	5991.9	13.59%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-1	-4.084e+00	0.0458	1810.0	34.95%	14787.6	33.54%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-1	-3.805e+00	0.0600	2806.0	54.18%	23267.7	52.78%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-1	-3.789e+00	0.0603	3525.0	68.06%	29426.0	66.75%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-1	-3.650e+00	0.0686	2735.0	52.81%	22682.5	51.45%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-1	-3.627e+00	0.0695	17.0	0.33%	85.8	0.19%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-1	-2.993e+00	0.1297	102.0	1.97%	733.2	1.66%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-1	-2.974e+00	0.1309	1116.0	21.55%	9089.8	20.62%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-1	-2.938e+00	0.1344	221.0	4.27%	1685.5	3.82%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-1	-2.892e+00	0.1394	828.0	15.99%	6692.2	15.18%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-1	-2.889e+00	0.1394	1170.0	22.59%	9552.8	21.67%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-1	-2.880e+00	0.1394	307.0	5.93%	2387.1	5.41%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-1	-2.749e+00	0.1564	432.0	8.34%	3422.3	7.76%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-1	-2.694e+00	0.1637	1832.0	35.37%	15155.9	34.38%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-1	-2.683e+00	0.1640	175.0	3.38%	1328.4	3.01%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-1	-2.662e+00	0.1661	568.0	10.97%	4554.6	10.33%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-1	-2.632e+00	0.1695	565.0	10.91%	4532.9	10.28%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-1	-2.522e+00	0.1876	627.0	12.11%	5058.5	11.47%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-1	-2.487e+00	0.1927	407.0	7.86%	3238.8	7.35%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-1	-2.452e+00	0.1977	233.0	4.50%	1812.9	4.11%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-1	-2.399e+00	0.2066	357.0	6.89%	2833.9	6.43%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-1	-2.372e+00	0.2105	584.0	11.28%	4716.2	10.70%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-1	-2.314e+00	0.2213	159.0	3.07%	1219.4	2.77%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-2.182e+00	0.2504	1915.0	36.98%	15940.9	36.16%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.857e+00	0.3434	1035.0	19.98%	8561.6	19.42%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-1.666e+00	0.4125	1676.0	32.36%	14011.1	31.78%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.608e+00	0.4333	447.0	8.63%	3659.2	8.30%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.607e+00	0.4333	1792.0	34.60%	15006.5	34.04%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.572e+00	0.4420	1066.0	20.58%	8870.6	20.12%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-1.419e+00	0.5108	1057.0	20.41%	8822.2	20.01%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.406e+00	0.5137	365.0	7.05%	2997.3	6.80%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.316e+00	0.5575	24.0	0.46%	177.9	0.40%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.297e+00	0.5635	382.0	7.38%	3153.0	7.15%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.209e+00	0.6106	586.0	11.31%	4883.5	11.08%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.196e+00	0.6141	121.0	2.34%	980.9	2.23%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.070e+00	0.6914	358.0	6.91%	2982.5	6.77%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.066e+00	0.6914	178.0	3.44%	1468.3	3.33%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-9.508e-01	0.7670	921.0	17.78%	7769.8	17.62%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-8.861e-01	0.8122	932.0	18.00%	7878.9	17.87%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-8.813e-01	0.8122	3990.0	77.04%	33903.6	76.90%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-8.739e-01	0.8122	30.0	0.58%	243.5	0.55%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-8.667e-01	0.8122	1880.0	36.30%	15940.5	36.16%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-7.951e-01	0.8638	2296.0	44.33%	19503.9	44.24%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-7.656e-01	0.8833	648.0	12.51%	5495.6	12.47%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-7.066e-01	0.9302	557.0	10.75%	4735.5	10.74%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-6.950e-01	0.9344	1060.0	20.47%	9019.1	20.46%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-6.806e-01	0.9413	20.0	0.39%	168.2	0.38%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-6.606e-01	0.9536	226.0	4.36%	1926.8	4.37%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-6.547e-01	0.9536	479.0	9.25%	4083.7	9.26%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-6.545e-01	0.9536	356.0	6.87%	3035.3	6.89%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-6.001e-01	0.9923	1680.0	32.44%	14332.0	32.51%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-5.363e-01	1.0000	81.0	1.56%	703.8	1.60%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-4.743e-01	1.0000	907.0	17.51%	7791.0	17.67%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-4.693e-01	1.0000	6.0	0.12%	55.0	0.12%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-4.640e-01	1.0000	770.0	14.87%	6623.9	15.03%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-3.693e-01	1.0000	203.0	3.92%	1785.3	4.05%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-3.271e-01	1.0000	1689.0	32.61%	14542.2	32.99%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-3.127e-01	1.0000	701.0	13.54%	6094.2	13.82%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-2.926e-01	1.0000	106.0	2.05%	959.0	2.18%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-2.892e-01	1.0000	85.0	1.64%	774.2	1.76%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-2.884e-01	1.0000	1456.0	28.11%	12576.1	28.53%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-2.834e-01	1.0000	1831.0	35.35%	15783.1	35.80%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-2.785e-01	1.0000	2160.0	41.71%	18593.6	42.18%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-2.662e-01	1.0000	932.0	18.00%	8102.1	18.38%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-2.649e-01	1.0000	479.0	9.25%	4205.0	9.54%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-2.220e-01	1.0000	2257.0	43.58%	19465.1	44.15%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-2.204e-01	1.0000	1052.0	20.31%	9163.0	20.78%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-2.194e-01	1.0000	72.0	1.39%	673.5	1.53%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-2.115e-01	1.0000	820.0	15.83%	7174.8	16.27%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e0	-2.078e-01	1.0000	1307.0	25.24%	11359.4	25.77%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-1.561e-01	1.0000	2682.0	51.79%	23150.2	52.51%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.532e-01	1.0000	80.0	1.54%	762.1	1.73%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.179e-01	1.0000	78.0	1.51%	756.7	1.72%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-9.158e-02	1.0000	1232.0	23.79%	10841.0	24.59%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-8.925e-02	1.0000	1506.0	29.08%	13199.3	29.94%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-8.896e-02	1.0000	127.0	2.45%	1213.1	2.75%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-8.184e-02	1.0000	348.0	6.72%	3181.8	7.22%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-7.684e-02	1.0000	1544.0	29.81%	13547.7	30.73%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-7.522e-02	1.0000	1585.0	30.60%	13902.1	31.53%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-7.419e-02	1.0000	12.0	0.23%	148.8	0.34%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-6.243e-02	1.0000	720.0	13.90%	6459.8	14.65%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-5.955e-02	1.0000	27.0	0.52%	303.9	0.69%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-5.082e-02	1.0000	989.0	19.10%	8817.7	20.00%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-4.107e-02	1.0000	510.0	9.85%	4664.1	10.58%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-4.058e-02	1.0000	149.0	2.88%	1453.2	3.30%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-2.996e-02	1.0000	1444.0	27.88%	12811.7	29.06%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-2.984e-02	1.0000	896.0	17.30%	8068.4	18.30%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-2.891e-02	1.0000	534.0	10.31%	4906.0	11.13%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-2.567e-02	1.0000	2921.0	56.40%	25452.8	57.74%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-2.325e-02	1.0000	28.0	0.54%	336.7	0.76%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-2.318e-02	1.0000	786.0	15.18%	7134.7	16.18%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-2.289e-02	1.0000	2327.0	44.93%	20415.8	46.31%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.331e-02	1.0000	594.0	11.47%	5497.4	12.47%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-9.495e-03	1.0000	67.0	1.29%	745.9	1.69%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-8.079e-03	1.0000	2191.0	42.31%	19377.5	43.95%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-7.969e-03	1.0000	26.0	0.50%	339.1	0.77%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-7.122e-03	1.0000	1357.0	26.20%	12216.2	27.71%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-7.064e-03	1.0000	120.0	2.32%	1261.3	2.86%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-5.718e-03	1.0000	614.0	11.86%	5738.0	13.02%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-5.696e-03	1.0000	30.0	0.58%	388.5	0.88%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-5.389e-03	1.0000	841.0	16.24%	7744.1	17.57%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-2.411e-03	1.0000	230.0	4.44%	2331.5	5.29%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-2.208e-03	1.0000	1242.0	23.98%	11325.5	25.69%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-2.073e-03	1.0000	156.0	3.01%	1647.7	3.74%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-2.070e-03	1.0000	262.0	5.06%	2633.7	5.97%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-1.462e-03	1.0000	93.0	1.80%	1055.9	2.40%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.325e-03	1.0000	268.0	5.17%	2709.4	6.15%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.012e-03	1.0000	496.0	9.58%	4797.9	10.88%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.000e-03	1.0000	1266.0	24.44%	11600.1	26.31%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-9.860e-04	1.0000	1305.0	25.20%	11941.7	27.09%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-9.290e-04	1.0000	603.0	11.64%	5762.3	13.07%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-6.270e-04	1.0000	398.0	7.68%	3936.0	8.93%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-3.290e-04	1.0000	221.0	4.27%	2330.2	5.29%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.800e-04	1.0000	156.0	3.01%	1718.7	3.90%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.800e-04	1.0000	156.0	3.01%	1718.7	3.90%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-2.270e-04	1.0000	3234.0	62.44%	28555.1	64.77%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-6.600e-05	1.0000	2685.0	51.84%	24019.1	54.48%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-5.900e-05	1.0000	182.0	3.51%	2020.7	4.58%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-3.400e-05	1.0000	101.0	1.95%	1238.9	2.81%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-2.700e-05	1.0000	78.0	1.51%	1008.1	2.29%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-2.100e-05	1.0000	3365.0	64.97%	29820.0	67.64%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-1.500e-05	1.0000	102.0	1.97%	1269.1	2.88%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-1.100e-05	1.0000	2375.0	45.86%	21511.6	48.80%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.000e-05	1.0000	689.0	13.30%	6788.8	15.40%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-8.000e-06	1.0000	146.0	2.82%	1727.3	3.92%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-6.000e-06	1.0000	4400.0	84.96%	38371.3	87.04%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-6.000e-06	1.0000	1802.0	34.79%	16633.9	37.73%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-4.000e-06	1.0000	1300.0	25.10%	12269.9	27.83%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-4.000e-06	1.0000	1270.0	24.52%	12019.0	27.26%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-3.000e-06	1.0000	2262.0	43.68%	20627.1	46.79%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-2.000e-06	1.0000	147.0	2.84%	1779.7	4.04%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-2.000e-06	1.0000	1567.0	30.26%	14665.5	33.27%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-1.000e-06	1.0000	721.0	13.92%	7174.3	16.27%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.000e-06	1.0000	105.0	2.03%	1363.8	3.09%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.000e-06	1.0000	2055.0	39.68%	18944.9	42.97%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-0.000e+00	1.0000	2441.0	47.13%	22277.8	50.53%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-0.000e+00	1.0000	967.0	18.67%	9457.6	21.45%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-0.000e+00	1.0000	3157.0	60.96%	28359.8	64.33%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-0.000e+00	1.0000	1484.0	28.65%	14064.4	31.90%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-0.000e+00	1.0000	1730.0	33.40%	16236.0	36.83%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-0.000e+00	1.0000	139.0	2.68%	1778.4	4.03%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-0.000e+00	1.0000	1240.0	23.94%	11982.9	27.18%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-0.000e+00	1.0000	3227.0	62.31%	29044.5	65.88%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-0.000e+00	1.0000	1137.0	21.95%	11157.7	25.31%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-0.000e+00	1.0000	3801.0	73.39%	33847.4	76.78%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-0.000e+00	1.0000	1194.0	23.05%	11726.3	26.60%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-0.000e+00	1.0000	1850.0	35.72%	17498.5	39.69%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-0.000e+00	1.0000	975.0	18.83%	9920.5	22.50%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-0.000e+00	1.0000	366.0	7.07%	4244.8	9.63%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-0.000e+00	1.0000	4433.0	85.60%	39145.6	88.80%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-0.000e+00	1.0000	2157.0	41.65%	20513.7	46.53%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-0.000e+00	1.0000	1503.0	29.02%	14898.4	33.79%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-0.000e+00	1.0000	200.0	3.86%	2722.2	6.17%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-0.000e+00	1.0000	628.0	12.13%	7014.4	15.91%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-0.000e+00	1.0000	251.0	4.85%	3313.5	7.52%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-0.000e+00	1.0000	229.0	4.42%	3099.9	7.03%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	0.000e+00	1.0000	2464.0	47.58%	27428.1	62.22%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	0.000e+00	1.0000	759.0	14.66%	10087.9	22.88%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	0.000e+00	1.0000	405.0	7.82%	5328.5	12.09%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	0.000e+00	1.0000	48.0	0.93%	1309.1	2.97%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	0.000e+00	1.0000	606.0	11.70%	7931.8	17.99%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	0.000e+00	1.0000	904.0	17.46%	11586.4	26.28%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	0.000e+00	1.0000	693.0	13.38%	8849.0	20.07%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	0.000e+00	1.0000	1236.0	23.87%	14047.3	31.86%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	60.0	1.16%	1702.6	3.86%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	0.000e+00	1.0000	1438.0	27.77%	16032.8	36.37%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	0.000e+00	1.0000	104.0	2.01%	2135.6	4.84%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	0.000e+00	1.0000	524.0	10.12%	6405.8	14.53%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	0.000e+00	1.0000	1766.0	34.10%	17958.4	40.74%