Information for 9-GGCACAGATGCT (Motif 11)


Reverse Opposite:

p-value:1e-10
log p-value:-2.316e+01
Information Content per bp:1.599
Number of Target Sequences with motif53.0
Percentage of Target Sequences with motif19.78%
Number of Background Sequences with motif3683.9
Percentage of Background Sequences with motif7.51%
Average Position of motif in Targets416.9 +/- 228.7bp
Average Position of motif in Background334.8 +/- 214.3bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.19
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GGCACAGATGCT
NNVVCAGCTGBN

MA0522.1_Tcf3/Jaspar

Match Rank:2
Score:0.68
Offset:2
Orientation:forward strand
Alignment:GGCACAGATGCT-
--CACAGCTGCAG

MA0499.1_Myod1/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GGCACAGATGCT
NGNGACAGCTGCN

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:4
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GGCACAGATGCT----
AAGGCCAGATGGTCCGG

MA0091.1_TAL1::TCF3/Jaspar

Match Rank:5
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:GGCACAGATGCT--
--AACAGATGGTCN

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:6
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:GGCACAGATGCT
----CAGCTGNT

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.63
Offset:3
Orientation:forward strand
Alignment:GGCACAGATGCT-
---NCAGCTGCTG

Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer

Match Rank:8
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:GGCACAGATGCT-
---ACAGCTGTTV

MA0521.1_Tcf12/Jaspar

Match Rank:9
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GGCACAGATGCT-
--AACAGCTGCAG

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GGCACAGATGCT
CCAGGAACAG-----