Information for 11-TGCCTGCTATTT (Motif 12)


Reverse Opposite:

p-value:1e-9
log p-value:-2.180e+01
Information Content per bp:1.874
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif3.36%
Number of Background Sequences with motif71.0
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets362.6 +/- 152.8bp
Average Position of motif in Background303.4 +/- 210.5bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0497.1_MEF2C/Jaspar

Match Rank:1
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:TGCCTGCTATTT-------
----TTCTATTTTTAGNNN

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:TGCCTGCTATTT-----
-----KCTATTTTTRGH

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.63
Offset:6
Orientation:reverse strand
Alignment:TGCCTGCTATTT----
------CTATTTTTGG

MA0052.2_MEF2A/Jaspar

Match Rank:4
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:TGCCTGCTATTT------
---NNGCTATTTTTAGCN

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----TGCCTGCTATTT
NNACTTGCCTT------

PH0170.1_Tgif2/Jaspar

Match Rank:6
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----TGCCTGCTATTT
GTATTGACAGCTNNTT

PB0106.1_Arid5a_2/Jaspar

Match Rank:7
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TGCCTGCTATTT----
TNNTTTCGTATTNNANN

MA0033.1_FOXL1/Jaspar

Match Rank:8
Score:0.54
Offset:7
Orientation:reverse strand
Alignment:TGCCTGCTATTT---
-------TATGTNTA

MA0042.1_FOXI1/Jaspar

Match Rank:9
Score:0.53
Offset:4
Orientation:forward strand
Alignment:TGCCTGCTATTT----
----GGATGTTTGTTT

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:10
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-TGCCTGCTATTT
TTGCGTGCVA---