Information for 16-GCAGGAGCTAGC (Motif 17)


Reverse Opposite:

p-value:1e-8
log p-value:-1.936e+01
Information Content per bp:1.740
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif5.60%
Number of Background Sequences with motif375.6
Percentage of Background Sequences with motif0.77%
Average Position of motif in Targets263.3 +/- 207.2bp
Average Position of motif in Background333.3 +/- 219.3bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:1
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GCAGGAGCTAGC
ANCAGGATGT---

MA0098.2_Ets1/Jaspar

Match Rank:2
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GCAGGAGCTAGC
NNNACAGGAAGTGGN

PB0050.1_Osr1_1/Jaspar

Match Rank:3
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GCAGGAGCTAGC
ATTTACAGTAGCAAAA

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:4
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GCAGGAGCTAGC-
ATCCACAGGTGCGAAAA

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GCAGGAGCTAGC
NNCAGGTGNN---

PB0051.1_Osr2_1/Jaspar

Match Rank:6
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GCAGGAGCTAGC
ATGTACAGTAGCAAAG

MA0474.1_Erg/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GCAGGAGCTAGC
ACAGGAAGTGG-

POL013.1_MED-1/Jaspar

Match Rank:8
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GCAGGAGCTAGC
--CGGAGC----

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:9
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GCAGGAGCTAGC
NNVVCAGCTGBN---

MA0475.1_FLI1/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GCAGGAGCTAGC
ACAGGAAGTGG-