Information for 13-GCATATTTYA (Motif 18)


Reverse Opposite:

p-value:1e-7
log p-value:-1.702e+01
Information Content per bp:1.661
Number of Target Sequences with motif84.0
Percentage of Target Sequences with motif31.34%
Number of Background Sequences with motif8679.9
Percentage of Background Sequences with motif17.69%
Average Position of motif in Targets346.2 +/- 217.1bp
Average Position of motif in Background336.7 +/- 210.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.31
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GCATATTTYA
ATGCATAATTCA

PB0176.1_Sox5_2/Jaspar

Match Rank:2
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GCATATTTYA---
TATCATAATTAAGGA

PH0148.1_Pou3f3/Jaspar

Match Rank:3
Score:0.62
Offset:-7
Orientation:forward strand
Alignment:-------GCATATTTYA
AAAATATGCATAATAAA

MA0512.1_Rxra/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GCATATTTYA--
-CAAAGGTCAGA

PB0146.1_Mafk_2/Jaspar

Match Rank:5
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----GCATATTTYA-
CCTTGCAATTTTTNN

MA0114.2_HNF4A/Jaspar

Match Rank:6
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----GCATATTTYA-
NAGNNCAAAGTCCAN

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:7
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------GCATATTTYA
CANAGNNCAAAGTCCA

MA0484.1_HNF4G/Jaspar

Match Rank:8
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----GCATATTTYA
AGAGTCCAAAGTCCA

MA0017.1_NR2F1/Jaspar

Match Rank:9
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----GCATATTTYA
AGGTTCAAAGGTCA

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:10
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GCATATTTYA
AACAKATGGY-