Information for 20-TTTCTTGGCTCR (Motif 21)


Reverse Opposite:

p-value:1e-6
log p-value:-1.523e+01
Information Content per bp:1.659
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif5.22%
Number of Background Sequences with motif446.6
Percentage of Background Sequences with motif0.91%
Average Position of motif in Targets432.4 +/- 215.9bp
Average Position of motif in Background336.6 +/- 192.2bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0161.1_NFIC/Jaspar

Match Rank:1
Score:0.65
Offset:4
Orientation:forward strand
Alignment:TTTCTTGGCTCR
----TTGGCA--

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TTTCTTGGCTCR
ATTTCCTGTN---

EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer

Match Rank:3
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TTTCTTGGCTCR
ATTTCCTGTN---

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:TTTCTTGGCTCR
---CTTGGCAA-

MA0519.1_Stat5a::Stat5b/Jaspar

Match Rank:5
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:TTTCTTGGCTCR
-TTCTTGGAAAN

POL004.1_CCAAT-box/Jaspar

Match Rank:6
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:TTTCTTGGCTCR-
-TGATTGGCTANN

PH0057.1_Hoxb13/Jaspar

Match Rank:7
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----TTTCTTGGCTCR
NNAATTTTATTGGNTN-

MA0518.1_Stat4/Jaspar

Match Rank:8
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---TTTCTTGGCTCR
NNNTTTCCTGGAAA-

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TTTCTTGGCTCR
CACTTCCTGT----

MA0156.1_FEV/Jaspar

Match Rank:10
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TTTCTTGGCTCR
ATTTCCTG-----