Information for 17-TTAATTAGCA (Motif 23)


Reverse Opposite:

p-value:1e-5
log p-value:-1.337e+01
Information Content per bp:1.833
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif7.84%
Number of Background Sequences with motif1134.9
Percentage of Background Sequences with motif2.31%
Average Position of motif in Targets407.3 +/- 193.0bp
Average Position of motif in Background324.6 +/- 207.3bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.19
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0031.1_Hoxa3_1/Jaspar

Match Rank:1
Score:0.81
Offset:-1
Orientation:reverse strand
Alignment:-TTAATTAGCA---
GTTAATTANCTCNN

PH0135.1_Phox2a/Jaspar

Match Rank:2
Score:0.81
Offset:-5
Orientation:forward strand
Alignment:-----TTAATTAGCA-
CAGCATTAATTAGTAG

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:3
Score:0.81
Offset:1
Orientation:forward strand
Alignment:TTAATTAGCA
-TAATTAGN-

PH0060.1_Hoxb5/Jaspar

Match Rank:4
Score:0.79
Offset:-3
Orientation:forward strand
Alignment:---TTAATTAGCA---
ACGGTAATTAGCTCAT

PH0174.1_Vax1/Jaspar

Match Rank:5
Score:0.79
Offset:-3
Orientation:forward strand
Alignment:---TTAATTAGCA---
ACGTTAATTAACCCAG

PH0175.1_Vax2/Jaspar

Match Rank:6
Score:0.79
Offset:-3
Orientation:reverse strand
Alignment:---TTAATTAGCA---
GNCTTAATTAGTGNNN

PH0036.1_Gsx2/Jaspar

Match Rank:7
Score:0.79
Offset:-3
Orientation:forward strand
Alignment:---TTAATTAGCA---
AGGTTAATTAGCTGAT

PH0133.1_Pax7/Jaspar

Match Rank:8
Score:0.78
Offset:-4
Orientation:forward strand
Alignment:----TTAATTAGCA---
CGAACTAATTAGTACTA

PH0147.1_Pou3f2/Jaspar

Match Rank:9
Score:0.78
Offset:-5
Orientation:forward strand
Alignment:-----TTAATTAGCA--
GATAATTAATTAGTTTG

PH0160.1_Shox2/Jaspar

Match Rank:10
Score:0.78
Offset:-5
Orientation:reverse strand
Alignment:-----TTAATTAGCA--
NNNAATTAATTAANNNG