Information for 18-GTTGGCAGGA (Motif 26)


Reverse Opposite:

p-value:1e-4
log p-value:-1.088e+01
Information Content per bp:1.895
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif5.60%
Number of Background Sequences with motif743.5
Percentage of Background Sequences with motif1.51%
Average Position of motif in Targets373.9 +/- 230.2bp
Average Position of motif in Background333.3 +/- 205.0bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.80
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0161.1_NFIC/Jaspar

Match Rank:1
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GTTGGCAGGA
-TTGGCA---

MA0469.1_E2F3/Jaspar

Match Rank:2
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----GTTGGCAGGA-
NNGTGNGGGCGGGAG

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.63
Offset:3
Orientation:forward strand
Alignment:GTTGGCAGGA---
---GGCGGGAARN

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:4
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GTTGGCAGGA-
-CWGGCGGGAA

MA0470.1_E2F4/Jaspar

Match Rank:5
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GTTGGCAGGA---
--GGGCGGGAAGG

E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer

Match Rank:6
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GTTGGCAGGA----
--TGGCGGGAAAHB

MA0471.1_E2F6/Jaspar

Match Rank:7
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GTTGGCAGGA---
--GGGCGGGAAGG

PB0029.1_Hic1_1/Jaspar

Match Rank:8
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----GTTGGCAGGA-
NGTAGGTTGGCATNNN

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GTTGGCAGGA
CTTGGCAA--

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:10
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GTTGGCAGGA---
---ANCAGGATGT