Information for 11-AGCAGACA (Motif 27)


Reverse Opposite:

p-value:1e-4
log p-value:-1.027e+01
Information Content per bp:1.826
Number of Target Sequences with motif69.0
Percentage of Target Sequences with motif25.75%
Number of Background Sequences with motif7888.2
Percentage of Background Sequences with motif16.07%
Average Position of motif in Targets350.6 +/- 249.0bp
Average Position of motif in Background335.7 +/- 210.4bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.84
Offset:1
Orientation:reverse strand
Alignment:AGCAGACA---
-CCAGACRSVB

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.82
Offset:1
Orientation:reverse strand
Alignment:AGCAGACA-
-CCAGACAG

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.80
Offset:1
Orientation:reverse strand
Alignment:AGCAGACA-
-BCAGACWA

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.74
Offset:-4
Orientation:forward strand
Alignment:----AGCAGACA-----
CAAATCCAGACATCACA

PB0208.1_Zscan4_2/Jaspar

Match Rank:5
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---AGCAGACA-----
CGAAGCACACAAAATA

PB0130.1_Gm397_2/Jaspar

Match Rank:6
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---AGCAGACA-----
AGCGGCACACACGCAA

MA0117.1_Mafb/Jaspar

Match Rank:7
Score:0.67
Offset:1
Orientation:forward strand
Alignment:AGCAGACA-
-GCTGACGC

MA0092.1_Hand1::Tcfe2a/Jaspar

Match Rank:8
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--AGCAGACA
ATGCCAGACN

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----AGCAGACA
AGGTGHCAGACA

MA0513.1_SMAD2::SMAD3::SMAD4/Jaspar

Match Rank:10
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----AGCAGACA-
AGGTGNCAGACAG