Information for 19-NCCCTGATTN (Motif 28)


Reverse Opposite:

p-value:1e-3
log p-value:-7.352e+00
Information Content per bp:1.402
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif8.96%
Number of Background Sequences with motif2110.9
Percentage of Background Sequences with motif4.30%
Average Position of motif in Targets395.8 +/- 254.3bp
Average Position of motif in Background334.4 +/- 200.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.70
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0038.1_Gfi1/Jaspar

Match Rank:1
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:NCCCTGATTN-
-CNGTGATTTN

PB0185.1_Tcf1_2/Jaspar

Match Rank:2
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--NCCCTGATTN--
TTGCCCGGATTAGG

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:3
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:NCCCTGATTN
GCAGTGATTT

MA0483.1_Gfi1b/Jaspar

Match Rank:4
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-NCCCTGATTN
TGCTGTGATTT

MA0502.1_NFYB/Jaspar

Match Rank:5
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:NCCCTGATTN--------
---CTGATTGGTCNATTT

MA0060.2_NFYA/Jaspar

Match Rank:6
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---NCCCTGATTN-----
AGAGTGCTGATTGGTCCA

PH0037.1_Hdx/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-NCCCTGATTN------
TNNNATGATTTCNNCNN

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:8
Score:0.62
Offset:3
Orientation:forward strand
Alignment:NCCCTGATTN-
---RGGATTAR

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:9
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:NCCCTGATTN
--NCTAATTA

NFY(CCAAT)/Promoter/Homer

Match Rank:10
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:NCCCTGATTN---
---CCGATTGGCT