Information for 5-TGCTAAAAATAG (Motif 4)


Reverse Opposite:

p-value:1e-12
log p-value:-2.909e+01
Information Content per bp:1.732
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif8.21%
Number of Background Sequences with motif515.0
Percentage of Background Sequences with motif1.05%
Average Position of motif in Targets323.9 +/- 185.5bp
Average Position of motif in Background333.5 +/- 199.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0052.2_MEF2A/Jaspar

Match Rank:1
Score:0.91
Offset:0
Orientation:forward strand
Alignment:TGCTAAAAATAG---
AGCTAAAAATAGCAT

MA0497.1_MEF2C/Jaspar

Match Rank:2
Score:0.89
Offset:-1
Orientation:forward strand
Alignment:-TGCTAAAAATAG--
ATGCTAAAAATAGAA

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.88
Offset:1
Orientation:forward strand
Alignment:TGCTAAAAATAG-
-DCYAAAAATAGM

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.86
Offset:2
Orientation:forward strand
Alignment:TGCTAAAAATAG
--CCAAAAATAG

MF0008.1_MADS_class/Jaspar

Match Rank:5
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:TGCTAAAAATAG
--CCATATATGG

MA0033.1_FOXL1/Jaspar

Match Rank:6
Score:0.59
Offset:3
Orientation:forward strand
Alignment:TGCTAAAAATAG
---TATACATA-

PB0145.1_Mafb_2/Jaspar

Match Rank:7
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----TGCTAAAAATAG
CAATTGCAAAAATAT-

MA0087.1_Sox5/Jaspar

Match Rank:8
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:TGCTAAAAATAG
---NAACAAT--

PB0116.1_Elf3_2/Jaspar

Match Rank:9
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TGCTAAAAATAG----
GTTCAAAAAAAAAATTC

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:10
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---TGCTAAAAATAG
TACTGGAAAAAAAA-