Information for 5-TTGCATAAGC (Motif 5)


Reverse Opposite:

p-value:1e-11
log p-value:-2.658e+01
Information Content per bp:1.657
Number of Target Sequences with motif72.0
Percentage of Target Sequences with motif26.87%
Number of Background Sequences with motif5598.9
Percentage of Background Sequences with motif11.41%
Average Position of motif in Targets358.9 +/- 209.8bp
Average Position of motif in Background335.4 +/- 212.6bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0006.1_bZIP_cEBP-like_subclass/Jaspar

Match Rank:1
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-TTGCATAAGC
ATTGCATAA--

MA0102.3_CEBPA/Jaspar

Match Rank:2
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-TTGCATAAGC
ATTGCACAATA

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:3
Score:0.76
Offset:0
Orientation:forward strand
Alignment:TTGCATAAGC
ATGMATATDC

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--TTGCATAAGC
ATTTGCATAA--

MA0466.1_CEBPB/Jaspar

Match Rank:5
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--TTGCATAAGC
TATTGCACAAT-

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:6
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-TTGCATAAGC
ATTGCATCAK-

MA0025.1_NFIL3/Jaspar

Match Rank:7
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---TTGCATAAGC
ANGTTACATAA--

MA0507.1_POU2F2/Jaspar

Match Rank:8
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----TTGCATAAGC
TTCATTTGCATAT--

PB0145.1_Mafb_2/Jaspar

Match Rank:9
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---TTGCATAAGC--
CAATTGCAAAAATAT

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:10
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-TTGCATAAGC
ATTGCATCAT-