Information for 6-GGATGGAACA (Motif 7)


Reverse Opposite:

p-value:1e-10
log p-value:-2.524e+01
Information Content per bp:1.841
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif12.69%
Number of Background Sequences with motif1560.8
Percentage of Background Sequences with motif3.18%
Average Position of motif in Targets360.1 +/- 222.8bp
Average Position of motif in Background338.4 +/- 206.7bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0152.1_NFATC2/Jaspar

Match Rank:1
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:GGATGGAACA
---TGGAAAA

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GGATGGAACA-
-CCAGGAACAG

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer

Match Rank:3
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GGATGGAACA-
-AATGGAAAAT

PB0098.1_Zfp410_1/Jaspar

Match Rank:4
Score:0.60
Offset:-7
Orientation:forward strand
Alignment:-------GGATGGAACA
TATTATGGGATGGATAA

PB0029.1_Hic1_1/Jaspar

Match Rank:5
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----GGATGGAACA--
NGTAGGTTGGCATNNN

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:6
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GGATGGAACA
MTGATGCAAT-

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:7
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GGATGGAACA
ATGATGCAAT-

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:8
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:GGATGGAACA----
----GGAACAAAGR

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:9
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GGATGGAACA
NTATYGATCH

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer

Match Rank:10
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GGATGGAACA-
ATGATKGATGRC