Information for 1-CAATACAGCACC (Motif 1)


Reverse Opposite:

p-value:1e-12
log p-value:-2.826e+01
Information Content per bp:1.936
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif16.00%
Number of Background Sequences with motif4.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets483.4 +/- 220.3bp
Average Position of motif in Background412.3 +/- 202.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0158.1_Rhox11_2/Jaspar

Match Rank:1
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CAATACAGCACC--
TCNCTTTACAGCGNNNT

PH0157.1_Rhox11_1/Jaspar

Match Rank:2
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CAATACAGCACC--
TCNNTTTACAGCGNNNT

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CAATACAGCACC
---CACAGN---

PB0051.1_Osr2_1/Jaspar

Match Rank:4
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CAATACAGCACC----
ATGTACAGTAGCAAAG

PB0106.1_Arid5a_2/Jaspar

Match Rank:5
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----CAATACAGCACC-
CATACAATACGAAATAA

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer

Match Rank:6
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CAATACAGCACC
GYCATCMATCAT-

PB0187.1_Tcf7_2/Jaspar

Match Rank:7
Score:0.55
Offset:-7
Orientation:reverse strand
Alignment:-------CAATACAGCACC
NNNTTTNTAATACNG----

PB0123.1_Foxl1_2/Jaspar

Match Rank:8
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----CAATACAGCACC
ATATCAAAACAAAACA

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.54
Offset:5
Orientation:forward strand
Alignment:CAATACAGCACC
-----CAGCC--

PB0050.1_Osr1_1/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CAATACAGCACC----
ATTTACAGTAGCAAAA