Information for 11-GGGGTTAATATT (Motif 11)


Reverse Opposite:

p-value:1e-6
log p-value:-1.454e+01
Information Content per bp:1.530
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif8.00%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets662.5 +/- 132.5bp
Average Position of motif in Background278.8 +/- 194.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0046.1_HNF1A/Jaspar

Match Rank:1
Score:0.73
Offset:2
Orientation:forward strand
Alignment:GGGGTTAATATT----
--GGTTAATAATTAAC

PH0130.1_Otx2/Jaspar

Match Rank:2
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----GGGGTTAATATT-
TGTAGGGATTAATTGTC

PH0129.1_Otx1/Jaspar

Match Rank:3
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----GGGGTTAATATT-
AGAGGGGATTAATTTAT

PB0002.1_Arid5a_1/Jaspar

Match Rank:4
Score:0.68
Offset:4
Orientation:forward strand
Alignment:GGGGTTAATATT------
----CTAATATTGCTAAA

PH0138.1_Pitx2/Jaspar

Match Rank:5
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----GGGGTTAATATT-
TGAAGGGATTAATCATC

PH0124.1_Obox5_1/Jaspar

Match Rank:6
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----GGGGTTAATATT-
TAGAGGGATTAAATTTC

PB0030.1_Hnf4a_1/Jaspar

Match Rank:7
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----GGGGTTAATATT
CTCCAGGGGTCAATTGA

PH0137.1_Pitx1/Jaspar

Match Rank:8
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----GGGGTTAATATT
TTAGAGGGATTAACAAT

PH0125.1_Obox5_2/Jaspar

Match Rank:9
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----GGGGTTAATATT-
NANAGGGATTAATTATN

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GGGGTTAATATT
AGGTGTTAAT---