Information for 13-GTGAATGTTGTC (Motif 13)


Reverse Opposite:

p-value:1e-6
log p-value:-1.454e+01
Information Content per bp:1.530
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif8.00%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets662.5 +/- 209.5bp
Average Position of motif in Background140.9 +/- 124.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0170.1_Sox17_2/Jaspar

Match Rank:1
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----GTGAATGTTGTC
NTTNTATGAATGTGNNC

PB0178.1_Sox8_2/Jaspar

Match Rank:2
Score:0.62
Offset:-6
Orientation:reverse strand
Alignment:------GTGAATGTTGTC
NNTNTCATGAATGT----

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----GTGAATGTTGTC
GAAAGTGAAAGT----

PB0062.1_Sox12_1/Jaspar

Match Rank:4
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GTGAATGTTGTC---
-TAATTGTTCTAAAC

PB0122.1_Foxk1_2/Jaspar

Match Rank:5
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GTGAATGTTGTC-----
--NNNTGTTGTTGTTNG

MA0133.1_BRCA1/Jaspar

Match Rank:6
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:GTGAATGTTGTC
----GTGTTGN-

PB0120.1_Foxj1_2/Jaspar

Match Rank:7
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GTGAATGTTGTC----
-GTNTTGTTGTGANNT

MA0488.1_JUN/Jaspar

Match Rank:8
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GTGAATGTTGTC--
-AAGATGATGTCAT

PB0172.1_Sox1_2/Jaspar

Match Rank:9
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GTGAATGTTGTC-
CTATAATTGTTAGCG

MA0508.1_PRDM1/Jaspar

Match Rank:10
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----GTGAATGTTGTC
AGAAAGTGAAAGTGA--