Information for 2-ACAGCAGCTC (Motif 15)


Reverse Opposite:

p-value:1e-6
log p-value:-1.401e+01
Information Content per bp:1.924
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif24.00%
Number of Background Sequences with motif665.9
Percentage of Background Sequences with motif1.34%
Average Position of motif in Targets477.3 +/- 300.7bp
Average Position of motif in Background356.3 +/- 226.5bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:1
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:ACAGCAGCTC
-CAGCTGNT-

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:2
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-ACAGCAGCTC-
AGCAGCTGCTNN

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.72
Offset:0
Orientation:forward strand
Alignment:ACAGCAGCTC
NCAGCTGCTG

Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer

Match Rank:4
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:ACAGCAGCTC
ACAGCTGTTV

MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:5
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:ACAGCAGCTC
-CAGCTGTT-

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:6
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:ACAGCAGCTC
HCAGCTGDTN

PB0051.1_Osr2_1/Jaspar

Match Rank:7
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----ACAGCAGCTC--
ATGTACAGTAGCAAAG

PB0050.1_Osr1_1/Jaspar

Match Rank:8
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----ACAGCAGCTC--
ATTTACAGTAGCAAAA

PB0003.1_Ascl2_1/Jaspar

Match Rank:9
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----ACAGCAGCTC---
CTCAGCAGCTGCTACTG

Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer

Match Rank:10
Score:0.65
Offset:0
Orientation:forward strand
Alignment:ACAGCAGCTC
ACAGCTGTTN