Information for 16-GSAGGYCAGRAT (Motif 16)


Reverse Opposite:

p-value:1e-5
log p-value:-1.153e+01
Information Content per bp:1.856
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif8.00%
Number of Background Sequences with motif9.3
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets662.5 +/- 316.5bp
Average Position of motif in Background491.6 +/- 191.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:1
Score:0.68
Offset:2
Orientation:forward strand
Alignment:GSAGGYCAGRAT
--AGGTCA----

MA0160.1_NR4A2/Jaspar

Match Rank:2
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GSAGGYCAGRAT
-AAGGTCAC---

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GSAGGYCAGRAT
CAAAGGTCAG---

MA0071.1_RORA_1/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GSAGGYCAGRAT
ATCAAGGTCA----

MA0512.1_Rxra/Jaspar

Match Rank:5
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GSAGGYCAGRAT
CAAAGGTCAGA--

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GSAGGYCAGRAT
TCAAGGTCAN---

MA0258.2_ESR2/Jaspar

Match Rank:7
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GSAGGYCAGRAT-----
--AGGTCACCCTGACCT

MA0141.2_Esrrb/Jaspar

Match Rank:8
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----GSAGGYCAGRAT
AGCTCAAGGTCA----

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:9
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GSAGGYCAGRAT
-CAGGTAAGTAT

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GSAGGYCAGRAT
-AAGGCAAGTGT