Information for 5-CCACAGTATT (Motif 17)


Reverse Opposite:

p-value:1e-3
log p-value:-9.052e+00
Information Content per bp:1.530
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif28.00%
Number of Background Sequences with motif2342.8
Percentage of Background Sequences with motif4.72%
Average Position of motif in Targets261.7 +/- 181.9bp
Average Position of motif in Background354.4 +/- 220.0bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:1
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----CCACAGTATT
NWAACCACADNN--

MA0002.2_RUNX1/Jaspar

Match Rank:2
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CCACAGTATT
AAACCACAGAN--

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:3
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CCACAGTATT
NAAACCACAG----

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:4
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CCACAGTATT
AAACCACAGC---

POL009.1_DCE_S_II/Jaspar

Match Rank:5
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CCACAGTATT
-CACAGN---

MA0130.1_ZNF354C/Jaspar

Match Rank:6
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CCACAGTATT
ATCCAC------

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:7
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CCACAGTATT
AAACCACANN---

MA0032.1_FOXC1/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CCACAGTATT
GGTAAGTA--

MA0511.1_RUNX2/Jaspar

Match Rank:9
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----CCACAGTATT-
CAAACCACAAACCCC

PH0152.1_Pou6f1_2/Jaspar

Match Rank:10
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----CCACAGTATT---
GCAACCTCATTATNNNN