Information for 2-CAAGAAAA (Motif 18)


Reverse Opposite:

p-value:1e-3
log p-value:-8.713e+00
Information Content per bp:1.530
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif28.00%
Number of Background Sequences with motif2473.4
Percentage of Background Sequences with motif4.98%
Average Position of motif in Targets342.5 +/- 247.0bp
Average Position of motif in Background366.5 +/- 203.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0078.1_Hoxd13/Jaspar

Match Rank:1
Score:0.75
Offset:-4
Orientation:forward strand
Alignment:----CAAGAAAA----
CTACCAATAAAATTCT

PH0057.1_Hoxb13/Jaspar

Match Rank:2
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----CAAGAAAA----
AACCCAATAAAATTCG

PH0075.1_Hoxd10/Jaspar

Match Rank:3
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----CAAGAAAA-----
AATGCAATAAAATTTAT

MA0465.1_CDX2/Jaspar

Match Rank:4
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---CAAGAAAA
AAGCCATAAAA

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CAAGAAAA
NCYAATAAAA

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:6
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CAAGAAAA-
GTCATAAAAN

PH0064.1_Hoxb9/Jaspar

Match Rank:7
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----CAAGAAAA----
AGAGCCATAAAATTCG

PB0182.1_Srf_2/Jaspar

Match Rank:8
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----CAAGAAAA-----
GTTAAAAAAAAAAATTA

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:9
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CAAGAAAA
NACAGGAAAT

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:10
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----CAAGAAAA-
TACTGGAAAAAAAA