Information for 6-TCTGCGTCGG (Motif 19)


Reverse Opposite:

p-value:1e-3
log p-value:-7.595e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif4.00%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets638.0 +/- 0.0bp
Average Position of motif in Background450.4 +/- 14.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0179.1_Sp100_2/Jaspar

Match Rank:1
Score:0.63
Offset:2
Orientation:forward strand
Alignment:TCTGCGTCGG-------
--TCCGTCGCTTAAAAG

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.62
Offset:2
Orientation:forward strand
Alignment:TCTGCGTCGG--
--TGCGTGGGYG

Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer

Match Rank:3
Score:0.57
Offset:2
Orientation:forward strand
Alignment:TCTGCGTCGG----
--NGCGTGGGCGGR

MA0472.1_EGR2/Jaspar

Match Rank:4
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:TCTGCGTCGG------
-GTGCGTGGGCGGGNG

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----TCTGCGTCGG
VBSYGTCTGG-----

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:6
Score:0.54
Offset:2
Orientation:forward strand
Alignment:TCTGCGTCGG
--TGCGTG--

PB0202.1_Zfp410_2/Jaspar

Match Rank:7
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--TCTGCGTCGG-----
NNTNNGGGGCGGNGNGN

PB0114.1_Egr1_2/Jaspar

Match Rank:8
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-TCTGCGTCGG-----
TGCGGAGTGGGACTGG

MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer

Match Rank:9
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-TCTGCGTCGG-
TGCTGASTCAGC

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---TCTGCGTCGG
CTGTCTGG-----