Information for 1-ATTGTTCTCC (Motif 2)


Reverse Opposite:

p-value:1e-10
log p-value:-2.429e+01
Information Content per bp:1.894
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif32.00%
Number of Background Sequences with motif427.1
Percentage of Background Sequences with motif0.86%
Average Position of motif in Targets382.2 +/- 309.9bp
Average Position of motif in Background366.7 +/- 223.1bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0065.1_Sox15_1/Jaspar

Match Rank:1
Score:0.79
Offset:-6
Orientation:reverse strand
Alignment:------ATTGTTCTCC-
ANNTCTATTGTTCNNNA

PB0173.1_Sox21_2/Jaspar

Match Rank:2
Score:0.78
Offset:-5
Orientation:forward strand
Alignment:-----ATTGTTCTCC--
AATCAATTGTTCCGCTA

PB0072.1_Sox5_1/Jaspar

Match Rank:3
Score:0.78
Offset:-5
Orientation:reverse strand
Alignment:-----ATTGTTCTCC-
NNTTTATTGTTCTNNN

PB0070.1_Sox30_1/Jaspar

Match Rank:4
Score:0.76
Offset:-6
Orientation:reverse strand
Alignment:------ATTGTTCTCC
ANNTCCATTGTTCNNN

PB0063.1_Sox13_1/Jaspar

Match Rank:5
Score:0.75
Offset:-5
Orientation:reverse strand
Alignment:-----ATTGTTCTCC-
AANTTATTGTTCTNNA

PB0183.1_Sry_2/Jaspar

Match Rank:6
Score:0.75
Offset:-5
Orientation:reverse strand
Alignment:-----ATTGTTCTCC--
CNNNTATTGTTCNNNNN

PB0062.1_Sox12_1/Jaspar

Match Rank:7
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--ATTGTTCTCC--
TAATTGTTCTAAAC

MA0087.1_Sox5/Jaspar

Match Rank:8
Score:0.75
Offset:0
Orientation:forward strand
Alignment:ATTGTTCTCC
ATTGTTA---

MA0077.1_SOX9/Jaspar

Match Rank:9
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--ATTGTTCTCC
CCATTGTTC---

MF0011.1_HMG_class/Jaspar

Match Rank:10
Score:0.74
Offset:0
Orientation:forward strand
Alignment:ATTGTTCTCC
ATTGTT----