Information for 11-GCGACTAGTT (Motif 24)


Reverse Opposite:

p-value:1e-3
log p-value:-7.595e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif4.00%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.0 +/- 0.0bp
Average Position of motif in Background447.2 +/- 70.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0040.1_Hmbox1/Jaspar

Match Rank:1
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GCGACTAGTT------
GAAAACTAGTTAACATC

PH0168.1_Hnf1b/Jaspar

Match Rank:2
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GCGACTAGTT-------
ANNNCTAGTTAACNGNN

PH0033.1_Gbx1/Jaspar

Match Rank:3
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GCGACTAGTT------
TGCCACTAATTAGTGTA

PH0106.1_Msx1/Jaspar

Match Rank:4
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GCGACTAGTT-----
TGCAACTAATTAATTC

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:5
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GCGACTAGTT--
ACCGTGACTAATTNN

PH0039.1_Mnx1/Jaspar

Match Rank:6
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GCGACTAGTT-----
NNNCACTAATTANTNN

PH0027.1_Emx2/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GCGACTAGTT------
NNCCACTAATTAGNNNT

MA0132.1_Pdx1/Jaspar

Match Rank:8
Score:0.54
Offset:4
Orientation:forward strand
Alignment:GCGACTAGTT
----CTAATT

PH0029.1_En2/Jaspar

Match Rank:9
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GCGACTAGTT------
NTNCACTAATTAGNGCA

PH0135.1_Phox2a/Jaspar

Match Rank:10
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:GCGACTAGTT-------
-NNACTAATTAATNNNN