Information for 12-CCCATTCGCG (Motif 27)


Reverse Opposite:

p-value:1e-2
log p-value:-6.902e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif4.00%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets121.0 +/- 0.0bp
Average Position of motif in Background295.3 +/- 90.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NRF(NRF)/Promoter/Homer

Match Rank:1
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CCCATTCGCG-
GCGCATGCGCAC

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CCCATTCGCG
CCGATTGGCT

PB0138.1_Irf4_2/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CCCATTCGCG-----
AGTATTCTCGGTTGC

MA0158.1_HOXA5/Jaspar

Match Rank:4
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CCCATTCGCG
--AATTAGTG

PB0132.1_Hbp1_2/Jaspar

Match Rank:5
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CCCATTCGCG---
TGTTCCCATTGTGTACT

PB0170.1_Sox17_2/Jaspar

Match Rank:6
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CCCATTCGCG----
GACCACATTCATACAAT

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CCCATTCGCG
GGCCATTAAC-

NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CCCATTCGCG
CTGCGCATGCGC-

PB0199.1_Zfp161_2/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CCCATTCGCG--
NNGCNCTGCGCGGC

MA0506.1_NRF1/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CCCATTCGCG
GCGCCTGCGCA