Information for 13-CAACGGGGCG (Motif 28)


Reverse Opposite:

p-value:1e-2
log p-value:-6.902e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif4.00%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets364.0 +/- 0.0bp
Average Position of motif in Background371.6 +/- 104.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0076.1_Sp4_1/Jaspar

Match Rank:1
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--CAACGGGGCG-----
NNNAAGGGGGCGGGNNN

PB0110.1_Bcl6b_2/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CAACGGGGCG-----
NNTNAGGGGCGGNNNN

PB0202.1_Zfp410_2/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CAACGGGGCG------
NNTNNGGGGCGGNGNGN

PB0143.1_Klf7_2/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CAACGGGGCG-------
NNNTNGGGCGTATNNTN

Sp1(Zf)/Promoter/Homer

Match Rank:5
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:CAACGGGGCG-----
---GGGGGCGGGGCC

POL003.1_GC-box/Jaspar

Match Rank:6
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CAACGGGGCG------
--AGGGGGCGGGGCTG

MA0133.1_BRCA1/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CAACGGGGCG
ACAACAC----

PB0132.1_Hbp1_2/Jaspar

Match Rank:8
Score:0.58
Offset:-6
Orientation:reverse strand
Alignment:------CAACGGGGCG-
NNTNNACAATGGGANNN

PB0039.1_Klf7_1/Jaspar

Match Rank:9
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CAACGGGGCG-------
-NNAGGGGCGGGGTNNA

MA0143.3_Sox2/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CAACGGGGCG
AACAAAGG----