Information for 2-CAACCTAACACG (Motif 3)


Reverse Opposite:

p-value:1e-6
log p-value:-1.592e+01
Information Content per bp:1.530
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif8.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets393.0 +/- 20.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0121.1_Foxj3_2/Jaspar

Match Rank:1
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CAACCTAACACG---
AACACCAAAACAAAGGA

MA0042.1_FOXI1/Jaspar

Match Rank:2
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:CAACCTAACACG-
-AAACAAACANNC

PB0119.1_Foxa2_2/Jaspar

Match Rank:3
Score:0.52
Offset:0
Orientation:forward strand
Alignment:CAACCTAACACG---
AAAAATAACAAACGG

PB0043.1_Max_1/Jaspar

Match Rank:4
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:CAACCTAACACG------
--CCNNANCACGTGGTCN

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:5
Score:0.51
Offset:8
Orientation:reverse strand
Alignment:CAACCTAACACG--
--------CACGCA

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:6
Score:0.51
Offset:7
Orientation:reverse strand
Alignment:CAACCTAACACG---
-------GCACGTNC

MA0133.1_BRCA1/Jaspar

Match Rank:7
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-CAACCTAACACG
ACAACAC------

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:8
Score:0.50
Offset:-5
Orientation:forward strand
Alignment:-----CAACCTAACACG
CTTAACCACTTAAGGAT

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:9
Score:0.50
Offset:5
Orientation:forward strand
Alignment:CAACCTAACACG---
-----TBGCACGCAA

MA0004.1_Arnt/Jaspar

Match Rank:10
Score:0.49
Offset:8
Orientation:reverse strand
Alignment:CAACCTAACACG--
--------CACGTG