Information for 6-TCAATATGTGGT (Motif 6)


Reverse Opposite:

p-value:1e-6
log p-value:-1.592e+01
Information Content per bp:1.530
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif8.00%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets662.5 +/- 252.5bp
Average Position of motif in Background204.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:1
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:TCAATATGTGGT---
---NNHTGTGGTTWN

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:2
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:TCAATATGTGGT--
----NNTGTGGTTT

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:3
Score:0.64
Offset:4
Orientation:forward strand
Alignment:TCAATATGTGGT--
----GCTGTGGTTT

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:4
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:TCAATATGTGGT---
-----CTGTGGTTTN

MF0008.1_MADS_class/Jaspar

Match Rank:5
Score:0.63
Offset:1
Orientation:forward strand
Alignment:TCAATATGTGGT
-CCATATATGG-

MA0002.2_RUNX1/Jaspar

Match Rank:6
Score:0.62
Offset:3
Orientation:forward strand
Alignment:TCAATATGTGGT--
---GTCTGTGGTTT

ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer

Match Rank:7
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TCAATATGTGGT
ACAGGATGTGGT

PB0078.1_Srf_1/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TCAATATGTGGT-
TTCCATATATGGAA

MA0511.1_RUNX2/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TCAATATGTGGT---
GGGGTTTGTGGTTTG

PB0002.1_Arid5a_1/Jaspar

Match Rank:10
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----TCAATATGTGGT
NNTNNCAATATTAG--