Information for 8-TAATTGCTGGGG (Motif 8)


Reverse Opposite:

p-value:1e-6
log p-value:-1.517e+01
Information Content per bp:1.941
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif12.00%
Number of Background Sequences with motif24.7
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets563.8 +/- 219.5bp
Average Position of motif in Background401.3 +/- 188.2bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0041.1_Hmx1/Jaspar

Match Rank:1
Score:0.77
Offset:-6
Orientation:reverse strand
Alignment:------TAATTGCTGGGG
ANNCATTAATTGCTNGN-

PH0043.1_Hmx3/Jaspar

Match Rank:2
Score:0.74
Offset:-6
Orientation:reverse strand
Alignment:------TAATTGCTGGGG
ATTNNTTAATTGCTTGT-

MA0125.1_Nobox/Jaspar

Match Rank:3
Score:0.73
Offset:0
Orientation:forward strand
Alignment:TAATTGCTGGGG
TAATTGGT----

PH0042.1_Hmx2/Jaspar

Match Rank:4
Score:0.71
Offset:-6
Orientation:reverse strand
Alignment:------TAATTGCTGGGG
ATTCNTTAATTGCTTGT-

PH0063.1_Hoxb8/Jaspar

Match Rank:5
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----TAATTGCTGGGG
TTTATTAATTGCNNGN-

PH0109.1_Nkx1-1/Jaspar

Match Rank:6
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----TAATTGCTGGGG
TGCGCTAATTAGTGGGA

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:7
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-TAATTGCTGGGG
CTAATKGV-----

MA0075.1_Prrx2/Jaspar

Match Rank:8
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TAATTGCTGGGG
TAATT-------

PH0005.1_Barhl1/Jaspar

Match Rank:9
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----TAATTGCTGGGG
GNNTTAATTGGTTGTT

PH0006.1_Barhl2/Jaspar

Match Rank:10
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----TAATTGCTGGGG
NNNTTAATTGGTTTTT