Information for 9-GCATTGCGTCAM (Motif 9)


Reverse Opposite:

p-value:1e-6
log p-value:-1.482e+01
Information Content per bp:1.686
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif297.8
Percentage of Background Sequences with motif0.60%
Average Position of motif in Targets401.8 +/- 301.2bp
Average Position of motif in Background352.7 +/- 225.8bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0153.1_Nr2f2_2/Jaspar

Match Rank:1
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GCATTGCGTCAM---
CGCGCCGGGTCACGTA

MA0099.2_JUN::FOS/Jaspar

Match Rank:2
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:GCATTGCGTCAM
----TGAGTCA-

MA0119.1_TLX1::NFIC/Jaspar

Match Rank:3
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GCATTGCGTCAM
TGGCACCATGCCAA

PB0157.1_Rara_2/Jaspar

Match Rank:4
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GCATTGCGTCAM---
AGAGCGGGGTCAAGTA

PB0057.1_Rxra_1/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GCATTGCGTCAM----
NTNNNGGGGTCANGNNN

MA0018.2_CREB1/Jaspar

Match Rank:6
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GCATTGCGTCAM
---TGACGTCA-

MA0043.1_HLF/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GCATTGCGTCAM-
-NATTACGTAACC

PB0113.1_E2F3_2/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GCATTGCGTCAM----
AGCTCGGCGCCAAAAGC

PB0030.1_Hnf4a_1/Jaspar

Match Rank:9
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GCATTGCGTCAM----
CTCCAGGGGTCAATTGA

PB0118.1_Esrra_2/Jaspar

Match Rank:10
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GCATTGCGTCAM----
GGCGAGGGGTCAAGGGC