Information for 1-TTAACGAACKGA (Motif 1)


Reverse Opposite:

p-value:1e-112
log p-value:-2.600e+02
Information Content per bp:1.743
Number of Target Sequences with motif50.0
Percentage of Target Sequences with motif1.96%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets406.8 +/- 296.0bp
Average Position of motif in Background135.6 +/- 86.2bp
Strand Bias (log2 ratio + to - strand density)2.7
Multiplicity (# of sites on avg that occur together)1.92
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0067.1_Hoxc12/Jaspar

Match Rank:1
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----TTAACGAACKGA
GNNNTTTTACGACCTNA

PH0076.1_Hoxd11/Jaspar

Match Rank:2
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----TTAACGAACKGA
ANNATTTTACGACNTNA

PH0077.1_Hoxd12/Jaspar

Match Rank:3
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----TTAACGAACKGA
NNNATTTTACGACNNTN

PH0047.1_Hoxa11/Jaspar

Match Rank:4
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----TTAACGAACKGA
NNGTTTTACGACTTTA

PH0065.1_Hoxc10/Jaspar

Match Rank:5
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----TTAACGAACKGA
ANNTTTTACGACNTNN

PH0066.1_Hoxc11/Jaspar

Match Rank:6
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TTAACGAACKGA
NNNTTTTACGACNTTN

PB0162.1_Sfpi1_2/Jaspar

Match Rank:7
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----TTAACGAACKGA
CAAATTCCGGAACC--

MF0009.1_TRP(MYB)_class/Jaspar

Match Rank:8
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:TTAACGAACKGA--
------AACCGANA

PH0048.1_Hoxa13/Jaspar

Match Rank:9
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----TTAACGAACKGA
ANATTTTACGAGNNNN

PH0068.1_Hoxc13/Jaspar

Match Rank:10
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----TTAACGAACKGA
NAATTTTACGAGNTNN