Information for 11-ATCAAAATTTSK (Motif 11)


Reverse Opposite:

p-value:1e-70
log p-value:-1.620e+02
Information Content per bp:1.924
Number of Target Sequences with motif46.0
Percentage of Target Sequences with motif1.80%
Number of Background Sequences with motif10.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets405.9 +/- 315.6bp
Average Position of motif in Background390.8 +/- 241.6bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)1.39
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0151.1_ARID3A/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:ATCAAAATTTSK
ATTAAA------

PH0134.1_Pbx1/Jaspar

Match Rank:2
Score:0.64
Offset:-6
Orientation:forward strand
Alignment:------ATCAAAATTTSK
TCACCCATCAATAAACA-

PB0176.1_Sox5_2/Jaspar

Match Rank:3
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-ATCAAAATTTSK--
TATCATAATTAAGGA

PB0002.1_Arid5a_1/Jaspar

Match Rank:4
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---ATCAAAATTTSK
NNTNNCAATATTAG-

PB0105.1_Arid3a_2/Jaspar

Match Rank:5
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------ATCAAAATTTSK
ACCCGTATCAAATTT---

PB0165.1_Sox11_2/Jaspar

Match Rank:6
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---ATCAAAATTTSK
NNCNNAACAATTNT-

PB0064.1_Sox14_1/Jaspar

Match Rank:7
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----ATCAAAATTTSK
NNTAATTATAATTNNN

PB0079.1_Sry_1/Jaspar

Match Rank:8
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----ATCAAAATTTSK
NANTATTATAATTNNN

PB0001.1_Arid3a_1/Jaspar

Match Rank:9
Score:0.57
Offset:-7
Orientation:forward strand
Alignment:-------ATCAAAATTTSK
GGGTTTAATTAAAATTC--

PB0082.1_Tcf3_1/Jaspar

Match Rank:10
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----ATCAAAATTTSK
TATAGATCAAAGGAAAA