Information for 18-TYDKCACKAATG (Motif 17)


Reverse Opposite:

p-value:1e-60
log p-value:-1.392e+02
Information Content per bp:1.476
Number of Target Sequences with motif47.0
Percentage of Target Sequences with motif1.84%
Number of Background Sequences with motif18.9
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets470.9 +/- 364.5bp
Average Position of motif in Background433.0 +/- 200.1bp
Strand Bias (log2 ratio + to - strand density)2.5
Multiplicity (# of sites on avg that occur together)1.96
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0158.1_HOXA5/Jaspar

Match Rank:1
Score:0.66
Offset:4
Orientation:forward strand
Alignment:TYDKCACKAATG
----CACTAATT

MA0132.1_Pdx1/Jaspar

Match Rank:2
Score:0.66
Offset:6
Orientation:forward strand
Alignment:TYDKCACKAATG
------CTAATT

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:3
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TYDKCACKAATG--
ACCGTGACTAATTNN

PB0178.1_Sox8_2/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TYDKCACKAATG-
NNTNTCATGAATGT

PH0039.1_Mnx1/Jaspar

Match Rank:5
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:TYDKCACKAATG-----
-NNNCACTAATTANTNN

PB0096.1_Zfp187_1/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TYDKCACKAATG-
TTATGTACTAATAA

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:7
Score:0.58
Offset:6
Orientation:forward strand
Alignment:TYDKCACKAATG--
------CTAATKGV

PB0170.1_Sox17_2/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TYDKCACKAATG-----
NTTNTATGAATGTGNNC

PH0110.1_Nkx1-2/Jaspar

Match Rank:9
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:TYDKCACKAATG-------
--TGNACTAATTAGTGNAN

PH0150.1_Pou4f3/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TYDKCACKAATG---
GACNTCATTAATAANN