Information for 10-CTGCTAATTA (Motif 19)


Reverse Opposite:

p-value:1e-45
log p-value:-1.040e+02
Information Content per bp:1.588
Number of Target Sequences with motif907.0
Percentage of Target Sequences with motif35.50%
Number of Background Sequences with motif10846.8
Percentage of Background Sequences with motif23.06%
Average Position of motif in Targets371.6 +/- 258.5bp
Average Position of motif in Background331.0 +/- 210.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.31
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:1
Score:0.81
Offset:2
Orientation:reverse strand
Alignment:CTGCTAATTA
--NCTAATTA

PH0032.1_Evx2/Jaspar

Match Rank:2
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--CTGCTAATTA-----
CACCGCTAATTAGCGGT

PH0098.1_Lhx8/Jaspar

Match Rank:3
Score:0.79
Offset:-2
Orientation:reverse strand
Alignment:--CTGCTAATTA-----
CACCGCTAATTAGNNGN

PH0081.1_Pdx1/Jaspar

Match Rank:4
Score:0.78
Offset:-2
Orientation:reverse strand
Alignment:--CTGCTAATTA----
NTGNGCTAATTACCNN

PH0097.1_Lhx6_2/Jaspar

Match Rank:5
Score:0.78
Offset:-2
Orientation:reverse strand
Alignment:--CTGCTAATTA-----
NNNCGCTAATTAGNNGA

PH0155.1_Prrx2/Jaspar

Match Rank:6
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-CTGCTAATTA------
AAAGCTAATTAGCGAAA

PH0036.1_Gsx2/Jaspar

Match Rank:7
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--CTGCTAATTA----
NTNNGCTAATTANCNT

PH0045.1_Hoxa1/Jaspar

Match Rank:8
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--CTGCTAATTA----
CTGAGCTAATTACCGT

PH0074.1_Hoxd1/Jaspar

Match Rank:9
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--CTGCTAATTA-----
NNNAGCTAATTAGCTTA

PB0031.1_Hoxa3_1/Jaspar

Match Rank:10
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--CTGCTAATTA--
TGGAGGTAATTAAC