Information for 11-TTCGYACGTM (Motif 20)


Reverse Opposite:

p-value:1e-41
log p-value:-9.604e+01
Information Content per bp:1.901
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif1.37%
Number of Background Sequences with motif17.3
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets349.0 +/- 250.9bp
Average Position of motif in Background417.8 +/- 177.7bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.31
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:1
Score:0.75
Offset:2
Orientation:reverse strand
Alignment:TTCGYACGTM
--BGCACGTA

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:2
Score:0.72
Offset:3
Orientation:reverse strand
Alignment:TTCGYACGTM-
---GCACGTAY

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:3
Score:0.70
Offset:3
Orientation:forward strand
Alignment:TTCGYACGTM---
---GCACGTACCC

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:4
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:TTCGYACGTM-
---GCACGTNC

PB0027.1_Gmeb1_1/Jaspar

Match Rank:5
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--TTCGYACGTM-----
NNNTNGTACGTAANNNN

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:6
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--TTCGYACGTM
HTTTCCCASG--

MA0131.1_HINFP/Jaspar

Match Rank:7
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:TTCGYACGTM-
-GCGGACGTTN

PB0096.1_Zfp187_1/Jaspar

Match Rank:8
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---TTCGYACGTM-
TTATTAGTACATAN

MA0009.1_T/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TTCGYACGTM-
TTCACACCTAG

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:10
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TTCGYACGTM
ATTAACACCT-