Information for 13-TTTGGCAGCC (Motif 21)


Reverse Opposite:

p-value:1e-40
log p-value:-9.364e+01
Information Content per bp:1.591
Number of Target Sequences with motif1136.0
Percentage of Target Sequences with motif44.46%
Number of Background Sequences with motif14925.0
Percentage of Background Sequences with motif31.73%
Average Position of motif in Targets365.9 +/- 242.0bp
Average Position of motif in Background334.5 +/- 208.2bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.37
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:TTTGGCAGCC
CTTGGCAA--

MA0161.1_NFIC/Jaspar

Match Rank:2
Score:0.78
Offset:1
Orientation:forward strand
Alignment:TTTGGCAGCC
-TTGGCA---

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:3
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:TTTGGCAGCC
VBTGWCAGCB

PH0170.1_Tgif2/Jaspar

Match Rank:4
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--TTTGGCAGCC----
GTATTGACAGCTNNTT

PH0169.1_Tgif1/Jaspar

Match Rank:5
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---TTTGGCAGCC----
GATATTGACAGCTGCGT

PH0141.1_Pknox2/Jaspar

Match Rank:6
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TTTGGCAGCC----
NNATTGACAGGTGCTT

PH0105.1_Meis3/Jaspar

Match Rank:7
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TTTGGCAGCC----
GTATTGACAGGTNNTT

PH0102.1_Meis1/Jaspar

Match Rank:8
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TTTGGCAGCC----
NTATTGACAGCTNNTT

PH0104.1_Meis2/Jaspar

Match Rank:9
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TTTGGCAGCC----
NTATTGACAGGTNNTN

MA0498.1_Meis1/Jaspar

Match Rank:10
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----TTTGGCAGCC
NNNTGAGTGACAGCT