Information for 7-AATKTGBC (Motif 23)


Reverse Opposite:

p-value:1e-32
log p-value:-7.451e+01
Information Content per bp:1.560
Number of Target Sequences with motif1217.0
Percentage of Target Sequences with motif47.63%
Number of Background Sequences with motif16970.2
Percentage of Background Sequences with motif36.08%
Average Position of motif in Targets382.7 +/- 285.7bp
Average Position of motif in Background332.4 +/- 205.6bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.45
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:1
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-AATKTGBC
TAATTAGN-

PH0107.1_Msx2/Jaspar

Match Rank:2
Score:0.67
Offset:-6
Orientation:reverse strand
Alignment:------AATKTGBC---
ANCGCTAATTGGTCTNN

PH0089.1_Isx/Jaspar

Match Rank:3
Score:0.67
Offset:-6
Orientation:forward strand
Alignment:------AATKTGBC--
ACTCCTAATTAGTCGT

MA0132.1_Pdx1/Jaspar

Match Rank:4
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AATKTGBC
CTAATT----

MA0075.1_Prrx2/Jaspar

Match Rank:5
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-AATKTGBC
TAATT----

MA0125.1_Nobox/Jaspar

Match Rank:6
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AATKTGBC
TAATTGGT-

MA0158.1_HOXA5/Jaspar

Match Rank:7
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----AATKTGBC
CACTAATT----

PH0024.1_Dlx5/Jaspar

Match Rank:8
Score:0.64
Offset:-7
Orientation:reverse strand
Alignment:-------AATKTGBC-
NANNGNTAATTACCNN

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:9
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--AATKTGBC-----
NNAATTAGTCACGGT

PH0033.1_Gbx1/Jaspar

Match Rank:10
Score:0.63
Offset:-6
Orientation:reverse strand
Alignment:------AATKTGBC---
TNCACTAATTAGTNNNN