Information for 21-TGATCAATCCAT (Motif 27)


Reverse Opposite:

p-value:1e-10
log p-value:-2.384e+01
Information Content per bp:1.572
Number of Target Sequences with motif128.0
Percentage of Target Sequences with motif5.01%
Number of Background Sequences with motif1261.2
Percentage of Background Sequences with motif2.68%
Average Position of motif in Targets398.9 +/- 282.4bp
Average Position of motif in Background323.0 +/- 200.2bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.66
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0016.1_Cux1_1/Jaspar

Match Rank:1
Score:0.72
Offset:-5
Orientation:reverse strand
Alignment:-----TGATCAATCCAT
TNAGNTGATCAACCGGT

PB0144.1_Lef1_2/Jaspar

Match Rank:2
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TGATCAATCCAT--
GAAGATCAATCACTTA

PH0138.1_Pitx2/Jaspar

Match Rank:3
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TGATCAATCCAT---
GNNNATTAATCCCTNCN

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TGATCAATCCAT--
GAAGATCAATCACTAA

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:5
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TGATCAATCCAT
TGATTGATGA--

MA0070.1_PBX1/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TGATCAATCCAT
CCATCAATCAAA

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:7
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TGATCAATCCAT
TGATTRATGGCY

PH0130.1_Otx2/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TGATCAATCCAT---
GANNATTAATCCCTNNN

PH0132.1_Pax6/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TGATCAATCCAT----
TGATTAATTAATTGAC

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:10
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TGATCAATCCAT
TGAATTATGCAT