Information for 22-AGGCCCACTGCA (Motif 28)


Reverse Opposite:

p-value:1e-7
log p-value:-1.731e+01
Information Content per bp:1.960
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif0.39%
Number of Background Sequences with motif16.5
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets555.7 +/- 437.0bp
Average Position of motif in Background328.9 +/- 233.1bp
Strand Bias (log2 ratio + to - strand density)4.6
Multiplicity (# of sites on avg that occur together)4.90
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0091.1_Zbtb3_1/Jaspar

Match Rank:1
Score:0.77
Offset:0
Orientation:forward strand
Alignment:AGGCCCACTGCA-----
AATCGCACTGCATTCCG

PB0114.1_Egr1_2/Jaspar

Match Rank:2
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--AGGCCCACTGCA--
NNAGTCCCACTCNNNN

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:3
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--AGGCCCACTGCA
CTAGGCCT------

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AGGCCCACTGCA
AGGCCTNG----

PB0150.1_Mybl1_2/Jaspar

Match Rank:5
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AGGCCCACTGCA---
CGACCAACTGCCGTG

MA0461.1_Atoh1/Jaspar

Match Rank:6
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:AGGCCCACTGCA
--GCCATCTG--

Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer

Match Rank:7
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-AGGCCCACTGCA
YCCGCCCACGCN-

MA0122.1_Nkx3-2/Jaspar

Match Rank:8
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:AGGCCCACTGCA
---NCCACTTAN

PB0149.1_Myb_2/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AGGCCCACTGCA----
CGACCAACTGCCATGC

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.53
Offset:2
Orientation:forward strand
Alignment:AGGCCCACTGCA
--AASCACTCAA