Information for 3-TCTAAGTATCAT (Motif 3)


Reverse Opposite:

p-value:1e-91
log p-value:-2.113e+02
Information Content per bp:1.530
Number of Target Sequences with motif45.0
Percentage of Target Sequences with motif1.76%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets341.5 +/- 250.1bp
Average Position of motif in Background456.1 +/- 98.6bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0124.1_NKX3-1/Jaspar

Match Rank:1
Score:0.75
Offset:2
Orientation:reverse strand
Alignment:TCTAAGTATCAT
--TAAGTAT---

PB0064.1_Sox14_1/Jaspar

Match Rank:2
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TCTAAGTATCAT----
GCTAATTATAATTATC

PB0079.1_Sry_1/Jaspar

Match Rank:3
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TCTAAGTATCAT----
TATAATTATAATATTC

PB0105.1_Arid3a_2/Jaspar

Match Rank:4
Score:0.57
Offset:1
Orientation:forward strand
Alignment:TCTAAGTATCAT----
-ACCCGTATCAAATTT

PB0069.1_Sox21_1/Jaspar

Match Rank:5
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TCTAAGTATCAT----
TTTAATTATAATTAAG

MA0032.1_FOXC1/Jaspar

Match Rank:6
Score:0.56
Offset:0
Orientation:forward strand
Alignment:TCTAAGTATCAT
GGTAAGTA----

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:7
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TCTAAGTATCAT
NCTAATTA----

PH0151.1_Pou6f1_1/Jaspar

Match Rank:8
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----TCTAAGTATCAT-
NNNACCTCATTATCNTN

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:9
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:TCTAAGTATCAT----------
--GAAGTANCACGAATNMRAGT

PH0036.1_Gsx2/Jaspar

Match Rank:10
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----TCTAAGTATCAT
NTNNGCTAATTANCNT