Information for 24-TACCTGCACTCA (Motif 31)


Reverse Opposite:

p-value:1e-5
log p-value:-1.210e+01
Information Content per bp:1.959
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.27%
Number of Background Sequences with motif12.8
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets662.2 +/- 402.7bp
Average Position of motif in Background354.5 +/- 192.7bp
Strand Bias (log2 ratio + to - strand density)3.3
Multiplicity (# of sites on avg that occur together)6.29
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0122.1_Nkx3-2/Jaspar

Match Rank:1
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:TACCTGCACTCA-
----NCCACTTAN

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:2
Score:0.59
Offset:3
Orientation:forward strand
Alignment:TACCTGCACTCA--
---AGCCACTCAAG

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TACCTGCACTCA
NNCACCTGNN----

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.57
Offset:3
Orientation:forward strand
Alignment:TACCTGCACTCA-
---AASCACTCAA

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----TACCTGCACTCA
NNACTTACCTN------

PB0024.1_Gcm1_1/Jaspar

Match Rank:6
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---TACCTGCACTCA-
TCGTACCCGCATCATT

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:7
Score:0.55
Offset:4
Orientation:forward strand
Alignment:TACCTGCACTCA--
----RSCACTYRAG

MA0103.2_ZEB1/Jaspar

Match Rank:8
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---TACCTGCACTCA
CCTCACCTG------

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:9
Score:0.55
Offset:3
Orientation:forward strand
Alignment:TACCTGCACTCA-
---AAGCACTTAA

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:10
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---TACCTGCACTCA
GGGTACGTGC-----