Information for 4-TTGTTATTCAAG (Motif 4)


Reverse Opposite:

p-value:1e-87
log p-value:-2.009e+02
Information Content per bp:1.986
Number of Target Sequences with motif36.0
Percentage of Target Sequences with motif1.41%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets365.1 +/- 282.4bp
Average Position of motif in Background328.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.2
Multiplicity (# of sites on avg that occur together)1.36
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0119.1_Foxa2_2/Jaspar

Match Rank:1
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----TTGTTATTCAAG
NCNTTTGTTATTTNN-

MA0142.1_Pou5f1::Sox2/Jaspar

Match Rank:2
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--TTGTTATTCAAG-
CTTTGTTATGCAAAT

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TTGTTATTCAAG-
CATTGTTATGCAAAT

PB0129.1_Glis2_2/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TTGTTATTCAAG-
AATATTAATAAAGA

PB0093.1_Zfp105_1/Jaspar

Match Rank:5
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---TTGTTATTCAAG
NTNTTGTTGTTTGTN

PB0062.1_Sox12_1/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---TTGTTATTCAAG
TAATTGTTCTAAAC-

PB0073.1_Sox7_1/Jaspar

Match Rank:7
Score:0.62
Offset:-10
Orientation:reverse strand
Alignment:----------TTGTTATTCAAG
TNNANNTCTATTGTTNTNNANN

PB0172.1_Sox1_2/Jaspar

Match Rank:8
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------TTGTTATTCAAG
CTATAATTGTTAGCG---

MF0011.1_HMG_class/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TTGTTATTCAAG
ATTGTT-------

MA0087.1_Sox5/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TTGTTATTCAAG
ATTGTTA------