Information for 10-CAGTGCATAG (Motif 13)


Reverse Opposite:

p-value:1e-7
log p-value:-1.784e+01
Information Content per bp:1.537
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif4.14%
Number of Background Sequences with motif468.0
Percentage of Background Sequences with motif1.11%
Average Position of motif in Targets280.1 +/- 209.8bp
Average Position of motif in Background392.3 +/- 274.3bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CAGTGCATAG--
--ATGMATATDC

PH0148.1_Pou3f3/Jaspar

Match Rank:2
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CAGTGCATAG----
AAAATATGCATAATAAA

PB0091.1_Zbtb3_1/Jaspar

Match Rank:3
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CAGTGCATAG--
AATCGCACTGCATTCCG

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:4
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CAGTGCATAG
TTAAGTGCTT--

MA0122.1_Nkx3-2/Jaspar

Match Rank:5
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CAGTGCATAG
TTAAGTGGA---

PB0096.1_Zfp187_1/Jaspar

Match Rank:6
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CAGTGCATAG
TTATTAGTACATAN

MF0006.1_bZIP_cEBP-like_subclass/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CAGTGCATAG
-ATTGCATAA

PB0026.1_Gm397_1/Jaspar

Match Rank:8
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----CAGTGCATAG---
NNGTATGTGCACATNNN

PB0099.1_Zfp691_1/Jaspar

Match Rank:9
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----CAGTGCATAG---
CGAACAGTGCTCACTAT

MA0019.1_Ddit3::Cebpa/Jaspar

Match Rank:10
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CAGTGCATAG
GGGATTGCATNN