Information for 13-AGGAGCATTT (Motif 15)


Reverse Opposite:

p-value:1e-7
log p-value:-1.670e+01
Information Content per bp:1.791
Number of Target Sequences with motif36.0
Percentage of Target Sequences with motif5.73%
Number of Background Sequences with motif864.6
Percentage of Background Sequences with motif2.04%
Average Position of motif in Targets412.7 +/- 300.6bp
Average Position of motif in Background390.3 +/- 338.0bp
Strand Bias (log2 ratio + to - strand density)-0.9
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:AGGAGCATTT
CGGAGC----

PB0099.1_Zfp691_1/Jaspar

Match Rank:2
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---AGGAGCATTT----
NNNNTGAGCACTGTNNG

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AGGAGCATTT
GGGAGGACNG

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:4
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----AGGAGCATTT
ADGGYAGYAGCATCT

PB0154.1_Osr1_2/Jaspar

Match Rank:5
Score:0.56
Offset:-6
Orientation:reverse strand
Alignment:------AGGAGCATTT
NNNTTAGGTAGCNTNT

PB0155.1_Osr2_2/Jaspar

Match Rank:6
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------AGGAGCATTT
NNTGTAGGTAGCANNT

PH0041.1_Hmx1/Jaspar

Match Rank:7
Score:0.53
Offset:0
Orientation:forward strand
Alignment:AGGAGCATTT-------
ACAAGCAATTAATGAAT

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:8
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--AGGAGCATTT
CCAGGAACAG--

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:9
Score:0.52
Offset:2
Orientation:forward strand
Alignment:AGGAGCATTT--
--AAGCACTTAA

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:10
Score:0.52
Offset:-6
Orientation:forward strand
Alignment:------AGGAGCATTT-
ATCCACAGGTGCGAAAA